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| author | Pjotr Prins | 2017-12-19 03:15:26 -0600 |
|---|---|---|
| committer | Pjotr Prins | 2017-12-19 03:15:26 -0600 |
| commit | b5ff80726ea07ffc7d2129cc89acdc5a1061fc9d (patch) | |
| tree | bd5ba4f349ee6a442f8c6d39639ddad1aae0ed08 | |
| parent | 015b06ae972859aa66efdbaf344afcb0bbb3951f (diff) | |
| download | guix-bioinformatics-b5ff80726ea07ffc7d2129cc89acdc5a1061fc9d.tar.gz | |
Openblas works
| -rw-r--r-- | gn/packages/gemma.scm | 12 |
1 files changed, 7 insertions, 5 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index 50d2c9d..4f5647c 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -89,6 +89,7 @@ (string-prefix? "i686" system) (string-prefix? "mips" system) (string-prefix? "aarch64" system))) + ; BINARY=64 NO_WARMUP=0 GEMM_MULTITHREAD_THRESHOLD=4 USE_THREAD=1 NO_AFFINITY=0 NO_LAPACK=0 NUM_THREADS=64 #:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out")) @@ -96,11 +97,11 @@ "NUM_THREADS=64" "BINARY=64" "NO_WARMUP=0" - ; "GEMM_MULTITHREAD_THRESHOLD=4" + "GEMM_MULTITHREAD_THRESHOLD=4" "USE_THREAD=1" - ; "NO_AFFINITY=0" + "NO_AFFINITY=0" "NO_LAPACK=0" - "COMMON_PROF=" ; disable profiling + "COMMON_PROF=0" ; disable profiling "DEBUG=0" ;; Build the library for all supported CPUs. This allows @@ -163,7 +164,7 @@ numbers.") (define-public gemma-git-gn2 ; guix candidate - (let ((commit "89690967e33bcde4fd8736fe048d0e9dce5c6266")) + (let ((commit "c760aa09c2aa91ca6270b5f898c27e9aed376a73")) (package (name "gemma-git-gn2") (version (string-append "0.97-" (string-take commit 7))) @@ -175,8 +176,9 @@ numbers.") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1kj1vsqdwnszyd2523snfiamgqgjdal65p1m9454p2ck72gxf7kn")))) + "0s61w8av70kqvkb00znrqnr59axygh9gnlxar8rfyasr5g6xvl8w")))) (inputs `( + ("gfortran:lib" ,gfortran "lib") ("gsl" ,gsl) ("eigen" ,eigen) ("shunit2" ,shunit2) |