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authorpjotrp2017-03-06 07:01:56 +0000
committerpjotrp2017-03-06 07:01:56 +0000
commit7e81557cf3be8badaf133861b1c355fb7a9a226a (patch)
treedfff604a44a537ad70db62f6c9b6fe6a87fc6c9e
parent58dc34fbcf6d1be8fb40d193242b5d954c633fd9 (diff)
downloadguix-bioinformatics-7e81557cf3be8badaf133861b1c355fb7a9a226a.tar.gz
qtlreaper: updated build scripts
-rw-r--r--gn/packages/genenetwork.scm20
1 files changed, 3 insertions, 17 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index be166a4..9199f00 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -89,7 +89,7 @@
(license #f)))
(define-public qtlreaper ; guix obsolete - but used in GN2
- (let ((commit "71fbbe2b35e4f54937be2d54d09fb71d25fe5fad"))
+ (let ((commit "dd9c7fb2a9d5fa40b4054e1bcb7c57905d98d5f8"))
(package
(name "qtlreaper")
(version (string-append "1.1-gn2-" (string-take commit 7) ))
@@ -102,28 +102,14 @@
(file-name (string-append name "-" (string-take commit 7)))
(sha256
(base32
- "0g0v20lh7773cm2xdqz6xzwjw4130y265n79z5x20p5aja5y5kmg"))))
+ "1ldcvyk8y8w6f4ci04hzx85sknd5a3h424p5bfi4fz32sm2p7fja"))))
(build-system python-build-system)
- (native-inputs
- `(("python2-setuptools" ,python2-setuptools)))
(arguments
`(#:python ,python-2
- #:phases
- (modify-phases %standard-phases
- (replace 'build
- (lambda* (#:key inputs #:allow-other-keys)
- (zero? (system* "python" "setup.py" "build"))))
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- ;; Build and install the Python bindings. The underlying
- ;; C++ library is apparently not meant to be installed.
- (let ((out (assoc-ref outputs "out")))
- (system* "python" "setup.py" "install"
- (string-append "--prefix=" out))))))
#:tests? #f)) ; no 'setup.py test' really!
(home-page "http://qtlreaper.sourceforge.net/")
- (synopsis "Rapidly scan expression data for QTLs")
+ (synopsis "Scan expression data for QTLs")
(description
"Batch-oriented version of WebQTL. It requires, as input,
expression data from members of a set of recombinant inbred lines and