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authorRoel Janssen2016-03-01 13:48:46 +0100
committerRoel Janssen2016-03-01 13:48:46 +0100
commit66fc6e38aa7326b49fb79790ba885ab77205b742 (patch)
tree2146362f05548ee0071b1df456100b462f7954d6
parent8dba0e74b31d02cf42fee9b9d93d1a3070cc0b24 (diff)
downloadguix-bioinformatics-66fc6e38aa7326b49fb79790ba885ab77205b742.tar.gz
Changed Sambamba source.
-rw-r--r--gn/packages/bioinformatics.scm14
1 files changed, 9 insertions, 5 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index ffa28ae..12a4bcb 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -470,19 +470,22 @@ association studies (GWAS).")
(license license:gpl3))))
(define-public sambamba
- (let ((commit "2ca5a2dbac5ab90c3b4c588519edc3edcb71df84"))
+ (let ((commit "c810c7ef14957f16288c205fd7b9d25c4ae7005d"))
+ ;;(let ((commit "2ca5a2dbac5ab90c3b4c588519edc3edcb71df84"))
(package
(name "sambamba")
(version (string-append "0.5.9-1." (string-take commit 7)))
(source (origin
(method git-fetch)
- (uri (git-reference
- (url "https://github.com/pjotrp/sambamba.git")
+ (uri (git-reference
+ (url "https://github.com/roelj/sambamba.git")
+ ;;(url "https://github.com/pjotrp/sambamba.git")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "1f14wn9aaxwjkmla6pzq3s28741carbr2v0fd2v2mm1dcpwnrqz5"))))
+ "0c4c13f021sl7mf5xc2v8dbwsz775n8dlsrrn7qa6qgbx05n54dv"))))
+ ;;"1f14wn9aaxwjkmla6pzq3s28741carbr2v0fd2v2mm1dcpwnrqz5"))))
(build-system gnu-build-system)
(native-inputs
`(("ldc" ,ldc)
@@ -500,6 +503,7 @@ association studies (GWAS).")
"2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5" ".tar.gz"))
;;(uri "https://github.com/samtools/htslib/archive/1.3.tar.gz")
(file-name "htslib-2f3c3ea7b.tar.gz")
+ ;;(file-name "htslib-1.3.tar.gz")
(sha256
(base32 "0bl6w856afnbgdsw8bybsxpqsyf2ba3f12rqh47hhpxvv866g08w"))))
;;(base32 "1bqkif7yrqmiqak5yb74kgpb2lsdlg7y344qa1xkdg7k1l4m86i9"))
@@ -535,7 +539,7 @@ association studies (GWAS).")
'build
(lambda* (#:key inputs make-flags #:allow-other-keys)
(zero? (system* "make" "-f" "Makefile.guix"
- (string-append "LDC_LIB_PATH="
+ (string-append "LDC_LIB_PATH="
(assoc-ref inputs "ldc")
"/lib")))))
(replace