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authorPjotr Prins2015-09-18 14:25:01 +0900
committerPjotr Prins2015-09-18 14:25:01 +0900
commit3755985780e155f2f52641e700d928a0a9e8f8a1 (patch)
tree5613e2b0a488200519b622eb37245f7bbbd12e20
parent3dabef24b6d27ca682f25fbff0d6e6fe7d7ccc2e (diff)
downloadguix-bioinformatics-3755985780e155f2f52641e700d928a0a9e8f8a1.tar.gz
README for CWL
-rw-r--r--README.md8
1 files changed, 6 insertions, 2 deletions
diff --git a/README.md b/README.md
index 94ca0ed..1d19b7c 100644
--- a/README.md
+++ b/README.md
@@ -6,13 +6,17 @@ See [Guix Notes](https://github.com/pjotrp/guix-notes/blob/master/HACKING.org) f
 Set the GUIX_PACKAGE_PATH to point to the root of this directory
 before running Guix. E.g.
 
-: env GUIX_PACKAGE_PATH=../guix-bioinformatics/ guix package -A cwl
+    env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ guix package -A cwl
 
 or from the checked out Guix repo
 
-: env GUIX_PACKAGE_PATH=../guix-bioinformatics/ ./pre-inst-env guix package -A cwl
+    env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ ./pre-inst-env guix package -A cwl
 
 Some of these package definitions should make it upstream into the GNU
 Guix repository when tested and stable.
 
+## Specific packages
 
+Install the common workflow language tool cwltool with
+
+    env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ ./pre-inst-env guix package -i python2-cwltool