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authorpjotrp2017-03-05 13:46:59 +0000
committerpjotrp2017-03-05 13:46:59 +0000
commit58dc34fbcf6d1be8fb40d193242b5d954c633fd9 (patch)
tree17a9865eaf817e33cf50da758981cd1fcbc4ae78
parentafa4b031ef62abb32742008e9eb5513f9ce026f0 (diff)
downloadguix-bioinformatics-58dc34fbcf6d1be8fb40d193242b5d954c633fd9.tar.gz
qtlreaper: another python setuptools victim
-rw-r--r--gn/packages/genenetwork.scm23
1 files changed, 18 insertions, 5 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 73fb3b8..be166a4 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -92,7 +92,7 @@
(let ((commit "71fbbe2b35e4f54937be2d54d09fb71d25fe5fad"))
(package
(name "qtlreaper")
- (version (string-append "1.1-gn2" (string-take commit 7) ))
+ (version (string-append "1.1-gn2-" (string-take commit 7) ))
(source (origin
(method git-fetch)
(uri (git-reference
@@ -104,13 +104,26 @@
(base32
"0g0v20lh7773cm2xdqz6xzwjw4130y265n79z5x20p5aja5y5kmg"))))
(build-system python-build-system)
- ;; (native-inputs
- ;; `(("python-setuptools" ,python-setuptools)))
+ (native-inputs
+ `(("python2-setuptools" ,python2-setuptools)))
(arguments
`(#:python ,python-2
- ))
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'build
+ (lambda* (#:key inputs #:allow-other-keys)
+ (zero? (system* "python" "setup.py" "build"))))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ ;; Build and install the Python bindings. The underlying
+ ;; C++ library is apparently not meant to be installed.
+ (let ((out (assoc-ref outputs "out")))
+ (system* "python" "setup.py" "install"
+ (string-append "--prefix=" out))))))
+ #:tests? #f)) ; no 'setup.py test' really!
+
(home-page "http://qtlreaper.sourceforge.net/")
- (synopsis "Tool for scanning expression data for QTLs")
+ (synopsis "Rapidly scan expression data for QTLs")
(description
"Batch-oriented version of WebQTL. It requires, as input,
expression data from members of a set of recombinant inbred lines and