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| author | pjotrp | 2017-09-03 07:11:57 +0000 |
|---|---|---|
| committer | pjotrp | 2017-09-03 07:11:57 +0000 |
| commit | da8185eedd20c3ba34d62d3134db559db8fed0f4 (patch) | |
| tree | 252396ae9023c7d80c0ca7c9f557386076f10a19 | |
| parent | 92662274c27b447ee6874e9290ecd34fb36ab42c (diff) | |
| download | guix-bioinformatics-da8185eedd20c3ba34d62d3134db559db8fed0f4.tar.gz | |
gemma: updated wrapper to locate GEMMA
| -rw-r--r-- | gn/packages/gemma.scm | 14 |
1 files changed, 8 insertions, 6 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index ef6c156..ff0a486 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -183,14 +183,14 @@ association studies (GWAS).") (define-public gemma-wrapper (package (name "gemma-wrapper") - (version "0.0.1") + (version "0.92.2") (source (origin (method url-fetch) (uri (rubygems-uri "bio-gemma-wrapper" version)) (sha256 (base32 - "16csqx5y63i5z0zkk1nq671n0vba482faskgsp1x1h75majqjdql")))) + "08apz0imsxzwhzv2iicq2g5zx1iq1vlfrhk7khsfaydshbq5g741")))) (build-system ruby-build-system) (inputs `(("gemma-git-gn2" ,gemma-git-gn2))) (arguments @@ -198,12 +198,14 @@ association studies (GWAS).") #:phases (modify-phases %standard-phases (add-before - 'install 'set-gemma-path + 'build 'set-gemma-path (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) + (let ((out (assoc-ref outputs "out"))) (substitute* "bin/gemma-wrapper" - (("GEMMA_COMMAND=options[:gemma_command]") - (string-append "GEMMA_COMMAND=" (which "gemma")))))))))) + ; (("gemma_command = ENV['GEMMA_COMMAND']") + (("gemma_command = ENV.*") + (string-append "gemma_command = '" (which "gemma") "'"))) + )))))) (synopsis "Gemma wrapper for LOCO and caching") (description "Gemma wrapper") |