diff options
author | Efraim Flashner | 2019-09-29 08:14:08 -0500 |
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committer | Efraim Flashner | 2019-09-29 08:14:08 -0500 |
commit | b1401a0c37d5e36431f06bd96855143a461ce76a (patch) | |
tree | 90a91b05e626d61f5e6fb3b3581d6123551fc22b | |
parent | 1f72cc29b57416e433d11d84c2b26d61a9cb708f (diff) | |
download | guix-bioinformatics-b1401a0c37d5e36431f06bd96855143a461ce76a.tar.gz |
gn: Fixup more crates
-rw-r--r-- | gn/packages/crates-io.scm | 276 |
1 files changed, 197 insertions, 79 deletions
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm index 5bad4e0..39e9e17 100644 --- a/gn/packages/crates-io.scm +++ b/gn/packages/crates-io.scm @@ -113,7 +113,8 @@ ("rust-clap" ,rust-clap) ("rust-findshlibs" ,rust-findshlibs-0.4) ("rust-memmap" ,rust-memmap) - ("rust-rustc-test" ,rust-rustc-test)))))) + ("rust-rustc-test" ,rust-rustc-test)) + #:tests? #f)))) ; TODO: All the tests fail. (define-public rust-afl (package @@ -138,8 +139,7 @@ (("rust-rustc-version" ,rust-rustc-version) ("rust-xdg" ,rust-xdg)))) (home-page "https://github.com/rust-fuzz/afl.rs") - (synopsis - "Fuzzing Rust code with american-fuzzy-lop") + (synopsis "Fuzzing Rust code with american-fuzzy-lop") (description "Fuzzing Rust code with american-fuzzy-lop") (license license:asl2.0))) @@ -383,9 +383,9 @@ password-based key derivation.") (build-system cargo-build-system) (arguments `(#:cargo-inputs - (("rust-proc-macro2" ,rust-proc-macro2) - ("rust-quote" ,rust-quote) - ("rust-syn" ,rust-syn)))) + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)))) (home-page "https://github.com/dtolnay/automod") (synopsis "Pull in every source file in a directory as a module.") (description @@ -805,7 +805,7 @@ length} and @code{key length} parameters can be used.") (("rust-accelerate-src" ,rust-accelerate-src) ("rust-intel-mkl-src" ,rust-intel-mkl-src) ("rust-netlib-src" ,rust-netlib-src) - ("rust-openblas-src" ,rust-openblas-src)))) + ("rust-openblas-src" ,rust-openblas-src-0.6)))) (home-page "https://github.com/blas-lapack-rs/blas-src") (synopsis @@ -1064,8 +1064,9 @@ length} and @code{key length} parameters can be used.") "09yl2700crxa4n860b080msij25klvs1kfzazhp2aihchvr16q4j")))) (build-system cargo-build-system) (arguments - `(#:cargo-development-inputs - (("rust-quickcheck" ,rust-quickcheck-0.4)))) + `(#:cargo-development-inputs + (("rust-quickcheck" ,rust-quickcheck-0.4)) + #:tests? #f)) ; Tests require 'unicode' crate. (home-page "https://github.com/japaric/cast.rs") (synopsis "Ergonomic, checked cast functions for primitive types") @@ -1180,19 +1181,18 @@ length} and @code{key length} parameters can be used.") (origin (method url-fetch) (uri (crate-uri "ci_info" version)) - (file-name - (string-append name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "01n3gxmwp765m6xg1fl8v1y12wsvbqvlcai27kdr5d2skrijyfb7")))) + (base32 + "01n3gxmwp765m6xg1fl8v1y12wsvbqvlcai27kdr5d2skrijyfb7")))) (build-system cargo-build-system) (arguments - `(#:cargo-inputs - (("rust-envmnt" ,rust-envmnt) - ("rust-serde" ,rust-serde) - ("rust-serde-derive" ,rust-serde-derive)))) - (home-page - "https://github.com/sagiegurari/ci_info") + `(#:cargo-inputs + (("rust-envmnt" ,rust-envmnt) + ("rust-serde" ,rust-serde) + ("rust-serde-derive" ,rust-serde-derive)) + #:tests? #f)) ; Tests require internet. + (home-page "https://github.com/sagiegurari/ci_info") (synopsis "Provides current CI environment information.") (description @@ -1276,60 +1276,34 @@ length} and @code{key length} parameters can be used.") (origin (method url-fetch) (uri (crate-uri "clap" version)) - (file-name - (string-append name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 "1nf6ld3bims1n5vfzhkvcb55pdzh04bbhzf8nil5vvw05nxzarsh")))) (build-system cargo-build-system) (arguments - `(#:cargo-inputs - (("rust-ansi-term" ,rust-ansi-term) - ("rust-atty" ,rust-atty) - ("rust-bitflags" ,rust-bitflags) - ("rust-clippy" ,rust-clippy) - ("rust-strsim" ,rust-strsim-0.8) - ("rust-term-size" ,rust-term-size) - ("rust-textwrap" ,rust-textwrap) - ("rust-unicode-width" ,rust-unicode-width) - ("rust-vec-map" ,rust-vec-map) - ("rust-yaml-rust" ,rust-yaml-rust-0.3)) - #:cargo-development-inputs - (("rust-lazy-static" ,rust-lazy-static) - ("rust-regex" ,rust-regex) - ("rust-version-sync" ,rust-version-sync)))) + `(#:cargo-inputs + (("rust-ansi-term" ,rust-ansi-term) + ("rust-atty" ,rust-atty) + ("rust-bitflags" ,rust-bitflags) + ("rust-clippy" ,rust-clippy) + ("rust-strsim" ,rust-strsim-0.8) + ("rust-term-size" ,rust-term-size) + ("rust-textwrap" ,rust-textwrap) + ("rust-unicode-width" ,rust-unicode-width) + ("rust-vec-map" ,rust-vec-map) + ("rust-yaml-rust" ,rust-yaml-rust-0.3)) + #:cargo-development-inputs + (("rust-lazy-static" ,rust-lazy-static) + ("rust-regex" ,rust-regex) + ("rust-version-sync" ,rust-version-sync)))) (home-page "https://clap.rs/") - (synopsis - "A simple to use, efficient, and full-featured Command Line Argument Parser") + (synopsis "Command Line Argument Parser") (description - "This package provides a simple to use, efficient, and full-featured Command Line Argument Parser") + "This package provides a simple to use, efficient, and full-featured +Command Line Argument Parser.") (license license:expat))) -(define-public rust-clippy - (package - (name "rust-clippy") - (version "0.0.302") - (source - (origin - (method url-fetch) - (uri (crate-uri "clippy" version)) - (file-name - (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "1562x3sq9mgmc8j39gd34wqm7ybrdvpmj7cc1n450gwsawayw4fr")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-term" ,rust-term-0.5)))) - (home-page "https://github.com/rust-lang/rust-clippy") - (synopsis - "A bunch of helpful lints to avoid common pitfalls in Rust.") - (description - "This package provides a bunch of helpful lints to avoid common pitfalls in Rust.") - (license (list license:asl2.0 - license:expat)))) - (define-public rust-compiler-error (package (name "rust-compiler-error") @@ -2475,7 +2449,14 @@ attributes.") (arguments `(#:cargo-inputs (("rust-encoding-index-tests" - ,rust-encoding-index-tests)))) + ,rust-encoding-index-tests)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-Cargo-toml + (lambda _ + (substitute* "Cargo.toml" + ((".*../tests.*") "")) + #t))))) (home-page "https://github.com/lifthrasiir/rust-encoding") (synopsis "Index tables for Japanese character encodings") @@ -2500,7 +2481,14 @@ attributes.") (arguments `(#:cargo-inputs (("rust-encoding-index-tests" - ,rust-encoding-index-tests)))) + ,rust-encoding-index-tests)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-Cargo-toml + (lambda _ + (substitute* "Cargo.toml" + ((".*../tests.*") "")) + #t))))) (home-page "https://github.com/lifthrasiir/rust-encoding") (synopsis "Index tables for Korean character encodings") @@ -2525,7 +2513,14 @@ attributes.") (arguments `(#:cargo-inputs (("rust-encoding-index-tests" - ,rust-encoding-index-tests)))) + ,rust-encoding-index-tests)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-Cargo-toml + (lambda _ + (substitute* "Cargo.toml" + ((".*../tests.*") "")) + #t))))) (home-page "https://github.com/lifthrasiir/rust-encoding") (synopsis "Index tables for simple Chienese character encodings") @@ -2550,7 +2545,14 @@ attributes.") (arguments `(#:cargo-inputs (("rust-encoding-index-tests" - ,rust-encoding-index-tests)))) + ,rust-encoding-index-tests)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-Cargo-toml + (lambda _ + (substitute* "Cargo.toml" + ((".*../tests.*") "")) + #t))))) (home-page "https://github.com/lifthrasiir/rust-encoding") (synopsis "Index tables for various single-byte character encodings") @@ -2596,9 +2598,15 @@ attributes.") (arguments `(#:cargo-inputs (("rust-encoding-index-tests" - ,rust-encoding-index-tests)))) - (home-page - "https://github.com/lifthrasiir/rust-encoding") + ,rust-encoding-index-tests)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-Cargo-toml + (lambda _ + (substitute* "Cargo.toml" + ((".*../tests.*") "")) + #t))))) + (home-page "https://github.com/lifthrasiir/rust-encoding") (synopsis "Index tables for traditional Chienese character encodings") (description "Index tables for traditional Chienese character encodings") @@ -2984,9 +2992,9 @@ attributes.") (build-system cargo-build-system) (arguments `(#:cargo-inputs - (("rust-proc-macro2" ,rust-proc-macro2) ; 1.0 - ("rust-quote" ,rust-quote) ; 1.0 - ("rust-syn" ,rust-syn)))) ; 1.0 + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)))) (home-page "https://github.com/dtolnay/rustversion") (synopsis "Conditional compilation according to rustc compiler version") @@ -5282,7 +5290,7 @@ futures-rs.") (("rust-rawpointer" ,rust-rawpointer)) #:cargo-development-inputs (("rust-bencher" ,rust-bencher) - ("rust-itertools" ,rust-itertools)))) + ("rust-itertools" ,rust-itertools-0.7)))) (home-page "https://github.com/bluss/matrixmultiply/") (synopsis "General matrix multiplication for f32 and f64 matrices.") @@ -5881,7 +5889,18 @@ futures-rs.") (build-system cargo-build-system) (arguments `(#:cargo-development-inputs - (("rust-libc" ,rust-libc)))) + (("rust-libc" ,rust-libc)) + #:cargo-build-flags '("--release" "--features=system") + #:cargo-test-flags '("--release" "--features=system") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'unbundle-openblas + (lambda _ + (delete-file-recursively "source") + #t))))) + (inputs + `(("gfortran" ,gfortran "lib") + ("openblas" ,openblas))) (home-page "https://github.com/blas-lapack-rs/openblas-src") (synopsis "Source of BLAS and LAPACK via OpenBLAS") (description @@ -5889,6 +5908,34 @@ futures-rs.") (license (list license:asl2.0 license:expat)))) +(define-public rust-openblas-src-0.6 + (package + (inherit rust-openblas-src) + (name "rust-openblas-src") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "openblas-src" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1bbs55s8bz2z0gcj7kh9ykxqn3x79m4cnmip7r6n5w4msyinalmg")))) + (arguments + `(#:cargo-development-inputs + (("rust-libc" ,rust-libc)) + #:cargo-build-flags '("--release" "--features=system") + #:cargo-test-flags '("--release" "--features=system") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'unbundle-openblas + (lambda _ + (delete-file-recursively "source") + #t))))) + (inputs + `(("gfortran" ,gfortran "lib") + ("openblas" ,openblas))))) + (define-public rust-openssl (package (name "rust-openssl") @@ -5907,7 +5954,7 @@ futures-rs.") `(#:cargo-inputs (("rust-bitflags" ,rust-bitflags) ("rust-cfg-if" ,rust-cfg-if) - ("rust-foreign-types" ,rust-foreign-types) + ("rust-foreign-types" ,rust-foreign-types) ; 0.3 ("rust-lazy-static" ,rust-lazy-static) ("rust-libc" ,rust-libc) ("rust-openssl-sys" ,rust-openssl-sys)) @@ -6535,6 +6582,27 @@ futures-rs.") (license (list license:asl2.0 license:expat)))) +(define-public rust-proc-macro2-1 + (package + (inherit rust-proc-macro2) + (name "rust-proc-macro2") + (version "1.0.4") + (source + (origin + (method url-fetch) + (uri (crate-uri "proc-macro2" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1k5brpv0c20whjhjvyjwksg4fgdcgnxjx53248kfsw7cfk67gp5g")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-unicode-xid" ,rust-unicode-xid)) + #:cargo-development-inputs + (("rust-quote" ,rust-quote-1)))))) + (define-public rust-proc-macro2-0.3.5 (package (inherit rust-proc-macro2) @@ -6889,6 +6957,28 @@ invocations.") (delete 'build)) ; Build needs 'unicode' crate. #:tests? #f)))) ; Tests need 'unicode' crate. +(define-public rust-quote-1 + (package + (inherit rust-quote) + (name "rust-quote") + (version "1.0.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "quote" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1zkc46ryacf2jdkc6krsy2z615xbk1x8kp1830rcxz3irj5qqfh5")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-proc-macro2" ,rust-proc-macro2-1)) + #:cargo-development-inputs + (("rust-rustversion" ,rust-rustversion) + ("rust-trybuild" ,rust-trybuild)))))) + (define-public rust-quote-0.5 (package (inherit rust-quote) @@ -7955,7 +8045,7 @@ invocations.") "0ms9hgdhhsxw9w920i7gipydvagf100bb56jbs192rz86ln01v7r")))) (arguments `(#:cargo-development-inputs - (("rust-quickcheck" ,rust-quickcheck) ; 0.2 + (("rust-quickcheck" ,rust-quickcheck-0.2) ("rust-rand" ,rust-rand-0.3)))))) (define-public rust-reqwest @@ -8228,7 +8318,7 @@ invocations.") (("rust-no-panic" ,rust-no-panic)) #:cargo-development-inputs (("rust-num-cpus" ,rust-num-cpus) - ("rust-rand" ,rust-rand)))) + ("rust-rand" ,rust-rand-0.5)))) (home-page "https://github.com/dtolnay/ryu") (synopsis "Fast floating point to string conversion") @@ -9546,6 +9636,34 @@ function with proven statistical guarantees.") ("rust-regex" ,rust-regex) ("rust-walkdir" ,rust-walkdir)))))) +(define-public rust-syn-1 + (package + (inherit rust-syn) + (name "rust-syn") + (version "1.0.5") + (source + (origin + (method url-fetch) + (uri (crate-uri "syn" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1gw03w7lzrlqmp2vislcybikgl5wkhrqi6sy70w93xss2abhx1b6")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-unicode-xid" ,rust-unicode-xid)) + #:cargo-development-inputs + (("rust-insta" ,rust-insta) + ("rust-rayon" ,rust-rayon) + ("rust-ref-cast" ,rust-ref-cast) + ("rust-regex" ,rust-regex) + ("rust-termcolor" ,rust-termcolor) + ("rust-walkdir" ,rust-walkdir)))))) + (define-public rust-syn-0.11 (package (inherit rust-syn) |