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author | pjotrp | 2016-12-11 07:50:54 +0000 |
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committer | pjotrp | 2016-12-11 07:50:54 +0000 |
commit | 93882785222202358ae73b9b01b951a563445fcf (patch) | |
tree | 7de1c89b2f97ab96c2b2acf789596140490093ce | |
parent | 02c85bfe87c35a715cd95fc13c0f7b258c97fb44 (diff) | |
download | guix-bioinformatics-93882785222202358ae73b9b01b951a563445fcf.tar.gz |
pocl: remove pocl for the time being - it confuses things
-rw-r--r-- | gn/packages/pocl.scm | 307 |
1 files changed, 0 insertions, 307 deletions
diff --git a/gn/packages/pocl.scm b/gn/packages/pocl.scm deleted file mode 100644 index ad3417e..0000000 --- a/gn/packages/pocl.scm +++ /dev/null @@ -1,307 +0,0 @@ -;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com> -;;; -;;; This file is part of GNU Guix. -;;; -;;; GNU Guix is free software; you can redistribute it and/or modify it -;;; under the terms of the GNU General Public License as published by -;;; the Free Software Foundation; either version 3 of the License, or (at -;;; your option) any later version. -;;; -;;; GNU Guix is distributed in the hope that it will be useful, but -;;; WITHOUT ANY WARRANTY; without even the implied warranty of -;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -;;; GNU General Public License for more details. -;;; -;;; You should have received a copy of the GNU General Public License -;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. - -(define-module (gn packages pocl) - #:use-module ((guix licenses) #:prefix license:) - #:use-module (guix git-download) - #:use-module (guix download) - #:use-module (guix utils) - #:use-module (guix build-system gnu) - #:use-module (guix build-system cmake) - #:use-module (guix packages) - #:use-module (gnu packages) - #:use-module (srfi srfi-1) - #:use-module (gnu packages algebra) - #:use-module (gnu packages autotools) - #:use-module (gnu packages curl) - #:use-module (gnu packages boost) - #:use-module (gnu packages bootstrap) - #:use-module (gnu packages base) - #:use-module (gnu packages gawk) - #:use-module (gnu packages cmake) - #:use-module (gnu packages gcc) - #:use-module (gnu packages glib) - #:use-module (gnu packages image) - #:use-module (gnu packages video) - #:use-module (gnu packages textutils) - #:use-module (gnu packages gl) - #:use-module (gnu packages llvm) - #:use-module (gnu packages pkg-config) - #:use-module (gnu packages maths) - #:use-module (gnu packages mpi) - #:use-module (gnu packages web) - #:use-module (gnu packages perl) - #:use-module (gnu packages python) - #:use-module (gnu packages xorg) - #:use-module (gnu packages xml) - #:use-module (gnu packages version-control) - #:use-module (gnu packages ruby) - #:use-module (gnu packages gnupg) - #:use-module ((gnu packages zip) #:prefix gnuzip:) - #:use-module (gnu packages linux)) - -(define-public pocl -(let ((commit "7aefc52")) - (package - (name "pocl") - (version (string-append "v09rc-" commit )) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/pocl/pocl.git") - (commit commit))) - (file-name (string-append name "-" commit)) - (sha256 - (base32 - "03wbcxkx1w5kx0crangsnah0xq218bhb99vglmn00wcjhhw80qim")))) -(native-inputs `(("autoconf" ,autoconf) - ("automake" ,automake) - ("libtool" ,libtool) - ("cmake" ,cmake) - ("pkg-config" ,pkg-config))) -(inputs `(("python" ,python-2) - ("boost" ,boost) - ("dbus" ,dbus) - ("clang" ,clang-3.7.1) - ("clang-runtime" ,clang-runtime-3.7.1) - ("enca" ,enca) - ("eudev" ,eudev) - ("fftw-openmpi" ,fftw-openmpi) - ("glew" ,glew) - ("hwloc" ,hwloc) - ("libcap" ,libcap) - ("libjpeg" ,libjpeg) - ("libltdl" ,libltdl) - ("libtiff" ,libtiff) - ("llvm" ,llvm-3.7.1) - ("ocl-icd" ,ocl-icd) - ("opencl-headers" ,opencl-headers) - ("mesa-utils" ,mesa-utils) - ("openmpi" ,openmpi) - ("perl" ,perl) - ("randrproto" ,randrproto) - ("libxrandr" ,libxrandr) - ("xineramaproto" ,xineramaproto) - ("libxinerama" ,libxinerama) - ("libxcursor" ,libxcursor) - ("fftw-openmpi" ,fftw-openmpi))) - (build-system gnu-build-system) - (arguments - `(#:configure-flags '("--enable-icd") - #:tests? #f - #:phases - (modify-phases %standard-phases - (add-before - 'configure 'rewrite-usr-bin - (lambda _ - (zero? (system* "./autogen.sh"))))))) - (synopsis "pocl: Portable Computing Language (pocl) aims to become a MIT-licensed - open source implementation of the OpenCL standard which can be easily adapted for - new targets and devices, both for homogeneous CPU and heterogenous GPUs/accelerators.") - (description "Portable Computing Language (pocl) aims to become a MIT-licensed - open source implementation of the OpenCL standard which can be easily adapted for - new targets and devices, both for homogeneous CPU and heterogenous GPUs/accelerators.") - (home-page "http://portablecl.org/") - (license license:gpl2)))) - -(define-public ocl-icd - (package - (name "ocl-icd") - (version "2.2.9") - (source (origin - (method url-fetch) - (uri (string-append "https://forge.imag.fr/frs/download.php/716/ocl-icd-" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "1rgaixwnxmrq2aq4kcdvs0yx7i6krakarya9vqs7qwsv5hzc32hc")))) - (inputs `(("zip" ,gnuzip:zip) - ("autoconf" ,autoconf) - ("automake" ,automake) - ("ruby" ,ruby) - ("libtool" ,libtool) - ("opencl-headers" ,opencl-headers) - ("libgcrypt" ,libgcrypt))) - (build-system gnu-build-system) - (arguments - '(#:phases (modify-phases %standard-phases - (add-after 'unpack `bootstrap - (lambda _ - (zero? (system* "autoreconf" "-vfi"))))))) - (home-page "https://forge.imag.fr/projects/ocl-icd/") - (synopsis "OpenCL implementations are provided as ICD (Installable Client Driver).") - (description "OpenCL implementations are provided as ICD (Installable Client Driver). - An OpenCL program can use several ICD thanks to the use of an ICD Loader as provided by this project. - This free ICD Loader can load any (free or non free) ICD") - (license license:gpl2))) - - (define-public opencl-headers -(let ((commit "c1770dc")) - (package - (name "opencl-headers") - (version (string-append "2.1-" commit )) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/KhronosGroup/OpenCL-Headers.git") - (commit commit))) - (file-name (string-append name "-" commit)) - (sha256 - (base32 - "0m9fkblqja0686i2jjqiszvq3df95gp01a2674xknlmkd6525rck")))) - (propagated-inputs '()) - (inputs '()) - (native-inputs '()) - (build-system gnu-build-system) - (arguments - '(#:phases - (modify-phases %standard-phases - (delete 'configure) - (delete 'build) - (delete 'check) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (copy-recursively "." (string-append - (assoc-ref outputs "out") - "/include/CL"))))))) - (synopsis "The Khronos OpenCL headers") - (description "This package provides the Khronos OpenCL headers") - (home-page "https://www.khronos.org/registry/cl/") - (license license:gpl2)))) - -(define (clang-runtime-from-llvm llvm hash) - (package - (name "clang-runtime") - (version (package-version llvm-3.7.1)) - (source - (origin - (method url-fetch) - (uri (string-append "http://llvm.org/releases/" - version "/compiler-rt-" version ".src.tar.xz")) - (sha256 - (base32 - "10c1mz2q4bdq9bqfgr3dirc6hz1h3sq8573srd5q5lr7m7j6jiwx")))) - (build-system cmake-build-system) - (native-inputs (package-native-inputs llvm)) - (inputs - `(("llvm" ,llvm))) - (arguments - `(;; Don't use '-g' during the build to save space. - #:build-type "Release")) - - (home-page "http://compiler-rt.llvm.org") - (synopsis "Runtime library for Clang/LLVM") - (description - "The \"clang-runtime\" library provides the implementations of run-time -functions for C and C++ programs. It also provides header files that allow C -and C++ source code to interface with the \"sanitization\" passes of the clang -compiler. In LLVM this library is called \"compiler-rt\".") - (license license:ncsa) - - ;; <http://compiler-rt.llvm.org/> doesn't list MIPS as supported. - (supported-systems (delete "mips64el-linux" %supported-systems)))) - -(define (clang-from-llvm llvm clang-runtime hash) - (package - (name "clang") - (version (package-version llvm-3.7.1)) - (source - (origin - (method url-fetch) - (uri (string-append "http://llvm.org/releases/" - version "/cfe-" version ".src.tar.xz")) - (sha256 - (base32 - "0x065d0w9b51xvdjxwfzjxng0gzpbx45fgiaxpap45ragi61dqjn")) - (patches (list (search-patch "clang-libc-search-path.patch"))))) - ;; Using cmake allows us to treat llvm as an external library. There - ;; doesn't seem to be any way to do this with clang's autotools-based - ;; build system. - (build-system cmake-build-system) - (native-inputs (package-native-inputs llvm)) - (inputs - `(("libxml2" ,libxml2) - ("libstdc++-4.9", libstdc++-4.9) - ("python" ,python-2) - ("gcc-lib" ,gcc "lib") - ,@(package-inputs llvm))) - (propagated-inputs - `(("llvm" ,llvm) - ("clang-runtime" ,clang-runtime))) - (arguments - `(#:configure-flags - (list "-DCLANG_INCLUDE_TESTS=True" - - ;; Find libgcc_s, crtbegin.o, and crtend.o. - (string-append "-DGCC_INSTALL_PREFIX=" - (assoc-ref %build-inputs "gcc-lib")) - - ;; Use a sane default include directory. - (string-append "-DC_INCLUDE_DIRS=" - (assoc-ref %build-inputs "libc") - "/include")) - - ;; Don't use '-g' during the build to save space. - #:build-type "Release" - - #:phases (modify-phases %standard-phases - (add-after - 'unpack 'set-glibc-file-names - (lambda* (#:key inputs #:allow-other-keys) - (let ((libc (assoc-ref inputs "libc")) - (compiler-rt (assoc-ref inputs "clang-runtime"))) - (substitute* "lib/Driver/Tools.cpp" - ;; Patch the 'getLinuxDynamicLinker' function to that - ;; it uses the right dynamic linker file name. - (("/lib64/ld-linux-x86-64.so.2") - (string-append libc - ,(glibc-dynamic-linker))) - - ;; Link to libclang_rt files from clang-runtime. - (("TC\\.getDriver\\(\\)\\.ResourceDir") - (string-append "\"" compiler-rt "\""))) - - ;; Same for libc's libdir, to allow crt1.o & co. to be - ;; found. - (substitute* "lib/Driver/ToolChains.cpp" - (("@GLIBC_LIBDIR@") - (string-append libc "/lib"))))))))) - - ;; Clang supports the same environment variables as GCC. - (native-search-paths - (list (search-path-specification - (variable "CPATH") - (files '("include"))) - (search-path-specification - (variable "LIBRARY_PATH") - (files '("lib" "lib64"))))) - - (home-page "http://clang.llvm.org") - (synopsis "C language family frontend for LLVM") - (description - "Clang is a compiler front end for the C, C++, Objective-C and -Objective-C++ programming languages. It uses LLVM as its back end. The Clang -project includes the Clang front end, the Clang static analyzer, and several -code analysis tools.") - (license license:ncsa))) - - - - - |