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| author | root | 2021-02-05 14:06:23 +0000 |
|---|---|---|
| committer | root | 2021-02-05 14:06:23 +0000 |
| commit | 8b29e4bdfa9c2b90abe87b5876cb58e22406990d (patch) | |
| tree | b2bfb400a44b48b6c3d4f5279fe67ffa6975c6ab | |
| parent | 5329ba6cb2c303765dbb6eeef5f60667fb6e362c (diff) | |
| download | guix-bioinformatics-8b29e4bdfa9c2b90abe87b5876cb58e22406990d.tar.gz | |
gn1: make run in a container
| -rw-r--r-- | gn/packages/edash.scm | 1 | ||||
| -rw-r--r-- | gn/packages/genenetwork.scm | 2 | ||||
| -rw-r--r-- | gn/packages/jupyterhub.scm | 1 | ||||
| -rw-r--r-- | gn/packages/python.scm | 1 | ||||
| -rw-r--r-- | gn/services/gn1-httpd-config.scm | 6 |
5 files changed, 7 insertions, 4 deletions
diff --git a/gn/packages/edash.scm b/gn/packages/edash.scm index 7f52393..ac88e22 100644 --- a/gn/packages/edash.scm +++ b/gn/packages/edash.scm @@ -7,6 +7,7 @@ #:use-module (gnu packages web) #:use-module (gnu packages base) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-check) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index a3ed18f..0db7032 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -764,7 +764,7 @@ written in C") ;; Where GN1 is located: (GNROOT) (("/gnshare/gn") out) ;; Where the database is located: (sql_host) - (("tux01") "localhost")) + (("tux01.uthsc.edu") "127.0.0.1")) (substitute* '("web/webqtl/maintainance/QTL_Reaper_cal_lrs.py") (("128\\.169\\.5\\.59") "localhost")) ;; This directory (TMPDIR) is expected to be writable by apache. diff --git a/gn/packages/jupyterhub.scm b/gn/packages/jupyterhub.scm index cec115b..838412b 100644 --- a/gn/packages/jupyterhub.scm +++ b/gn/packages/jupyterhub.scm @@ -12,6 +12,7 @@ #:use-module (gnu packages monitoring) #:use-module (gnu packages openstack) #:use-module (gnu packages protobuf) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) diff --git a/gn/packages/python.scm b/gn/packages/python.scm index 9208a7a..226f179 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -11,6 +11,7 @@ #:use-module (gnu packages linux) #:use-module (gnu packages pcre) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-compression) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-science) diff --git a/gn/services/gn1-httpd-config.scm b/gn/services/gn1-httpd-config.scm index a8c7f3f..0511810 100644 --- a/gn/services/gn1-httpd-config.scm +++ b/gn/services/gn1-httpd-config.scm @@ -64,11 +64,11 @@ (define GN1-httpd-config (httpd-config-file - (server-name "gn1-test.genenetwork.org") + (server-name "gn1-new.genenetwork.org") ;; Defaults to httpd, should be same as 'package' above to launch service. (server-root httpd22-with-mod-python) - (user "nobody") - (group "root") + (user "gn1") + (group "users") (pid-file "/tmp/guix-gn1/httpd-genenetwork1.pid") (error-log "/tmp/guix-gn1/httpd-genenetwork1-error-log") (listen '("8042")) |