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| author | pjotrp | 2017-05-18 10:14:32 +0000 |
|---|---|---|
| committer | pjotrp | 2017-05-18 10:14:32 +0000 |
| commit | 774fcf1e81b820e4bb5e0ddd5db2edb37bb9ff4b (patch) | |
| tree | 2604fb7b4e988784bfcbada82fed82057033a30b | |
| parent | b4b3302171d163342dbfaa1c80bd0874dcbddfc4 (diff) | |
| download | guix-bioinformatics-774fcf1e81b820e4bb5e0ddd5db2edb37bb9ff4b.tar.gz | |
Update gemma and remove overwrite of TWITTER_POST_FETCHER_JS_PATH - JS_PATH is standard now
| -rw-r--r-- | gn/packages/gemma.scm | 4 | ||||
| -rw-r--r-- | gn/packages/genenetwork.scm | 4 |
2 files changed, 3 insertions, 5 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index 4ec2220..3c40317 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -107,14 +107,14 @@ association studies (GWAS).") (define-public gemma (package (name "gemma") - (version "0.95a") ; this build fails + (version "0.96") (source (origin (method url-fetch) (uri (string-append "https://github.com/xiangzhou/GEMMA/archive/v" version ".tar.gz")) (sha256 (base32 - "1h0fqs45gy0n1nr76pzzagrv1cbcp7zaz34ljqb09jljc7c3lw9p")))) + "055ynn16gd12pf78n4vr2a9jlwsbwzajpdnf2y2yilg1krfff222")))) (inputs `(("gsl" ,gsl) ("lapack" ,lapack) ("zlib" ,zlib))) diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 63d687c..0e0d02e 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -199,7 +199,7 @@ location of a putative QTL.") ("r-wgcna" ,r-wgcna) ("redis" ,redis) ("mysql" ,mysql) - ("gemma" ,gemma-git) + ("gemma" ,gemma) ("genenetwork2-files-small" ,genenetwork2-files-small) ("plink-ng" ,plink-ng) ("pylmm-gn2" ,pylmm-gn2) @@ -239,7 +239,6 @@ location of a putative QTL.") (lambda* (#:key inputs #:allow-other-keys) (let* ( (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" )) - (twittercmd (string-append (assoc-ref inputs "javascript-twitter-post-fetcher") "/share/genenetwork2/javascript/Twitter-Post-Fetcher")) (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis")) (plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2")) (gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma")) @@ -247,7 +246,6 @@ location of a putative QTL.") (substitute* '("etc/default_settings.py") (("^GENENETWORK_FILES =.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" )) - (("^TWITTER_POST_FETCHER_JS_PATH =.*") (string-append "TWITTER_POST_FETCHER_JS_PATH = \"" twittercmd "\"\n" )) (("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" )) (("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" )) (("^GEMMA_COMMAND =.*") (string-append "GEMMA_COMMAND = \"" gemmacmd "\"\n" )) |