diff options
| author | pjotrp | 2017-10-23 16:32:00 +0000 |
|---|---|---|
| committer | pjotrp | 2017-10-23 16:32:00 +0000 |
| commit | 3deb5c8f39442e39e774ce9c205d3946536c5367 (patch) | |
| tree | b8d82b3a7bbedccb4c7b55d52748a60fae5d5f27 | |
| parent | 2267d0e7d9ce272c61f3eb8f4b548b8f4bff85e2 (diff) | |
| download | guix-bioinformatics-3deb5c8f39442e39e774ce9c205d3946536c5367.tar.gz | |
Renamed plink-ng package since it went into mainline
| -rw-r--r-- | gn/packages/bioinformatics.scm | 4 | ||||
| -rw-r--r-- | gn/packages/genenetwork.scm | 4 |
2 files changed, 4 insertions, 4 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index dffa11e..56ff4ab 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -753,10 +753,10 @@ subsequent visualization, annotation and storage of results.") ;; LGPLv2.1+ (license (list license:gpl2 license:lgpl2.1+)))) -(define-public plink-ng +(define-public plink-ng-gn (let ((commit "5d1db4313ba0cc976562da233db4aced78975d10")) (package - (name "plink-ng") + (name "plink-ng-gn") (version (string-append "1.90b3-" commit )) ; Aug 11, 2016 (source (origin (method git-fetch) diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 5f119a7..514a85c 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -193,7 +193,7 @@ location of a putative QTL.") ("gemma-git-gn2" ,gemma-git-gn2) ("gemma-wrapper" ,gemma-wrapper) ("genenetwork2-files-small" ,genenetwork2-files-small) - ("plink-ng" ,plink-ng) + ("plink-ng-gn" ,plink-ng-gn) ("pylmm-gn2" ,pylmm-gn2) ("nginx" ,nginx) ("python2-flask" ,python2-flask) @@ -248,7 +248,7 @@ location of a putative QTL.") (let* ( (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" )) (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis")) - (plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2")) + (plink2cmd (string-append (assoc-ref inputs "plink-ng-gn") "/bin/plink2")) (gemmacmd (string-append (assoc-ref inputs "gemma-git-gn2") "/bin/gemma")) ) |