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authorEfraim Flashner2023-11-08 10:11:57 +0200
committerEfraim Flashner2023-11-08 10:14:12 +0200
commitfea0ff23da6c9e5db6540eb87d1ade4833d797c2 (patch)
tree95e5b97ef306997045052fe0fec5c4743ee97c5b
parent61f9525a81e4635162b1102a6fd8ef1ed7684055 (diff)
downloadguix-bioinformatics-fea0ff23da6c9e5db6540eb87d1ade4833d797c2.tar.gz
gn: lizardfs: Fix building.
* gn/packages/file-systems.scm (lizardfs)[source]: Add patch. [arguments]: Remove trailing #t from phases. [inputs]: Remove labels. Use fuse-2. * lizardfs-issues-found-on-Fedora-34-using-GCC-11.patch: New file.
-rw-r--r--gn/packages/file-systems.scm27
-rw-r--r--lizardfs-issues-found-on-Fedora-34-using-GCC-11.patch111
2 files changed, 123 insertions, 15 deletions
diff --git a/gn/packages/file-systems.scm b/gn/packages/file-systems.scm
index 709754a..bf92ed9 100644
--- a/gn/packages/file-systems.scm
+++ b/gn/packages/file-systems.scm
@@ -28,7 +28,8 @@
(file-name (git-file-name name version))
(sha256
(base32
- "0zk73wmx82ari3m2mv0zx04x1ggsdmwcwn7k6bkl5c0jnxffc4ax"))))
+ "0zk73wmx82ari3m2mv0zx04x1ggsdmwcwn7k6bkl5c0jnxffc4ax"))
+ (patches (search-patches "lizardfs-issues-found-on-Fedora-34-using-GCC-11.patch"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
@@ -58,8 +59,7 @@
(("etc/mfs") "/etc/lizardfs"))
;; Then adjust the install instructions.
(substitute* "src/data/CMakeLists.txt"
- (("^install.*") ""))
- #t))
+ (("^install.*") ""))))
(add-after 'unpack 'use-system-libraries
(lambda* (#:key inputs #:allow-other-keys)
(let ((gtest (assoc-ref inputs "googletest"))
@@ -99,9 +99,7 @@
;; fix FTBFS with glibc-2.28; for makedev
;; https://github.com/lizardfs/lizardfs/issues/655
(substitute* "src/chunkserver/iostat.h"
- (("sys/stat.h>") "sys/stat.h>\n#include <sys/sysmacros.h>"))
-
- #t)))
+ (("sys/stat.h>") "sys/stat.h>\n#include <sys/sysmacros.h>")))))
(add-after 'install 'install-extras
;; This got broken by changing the directories above.
(lambda* (#:key outputs #:allow-other-keys)
@@ -120,16 +118,15 @@
(lambda (file)
(copy-file file
(string-append etc "/" (basename file) ".dist")))
- (find-files data "\\.cfg(\\.in)?$"))
- #t)))))))
+ (find-files data "\\.cfg(\\.in)?$")))))))))
(inputs
- `(("bdb" ,bdb)
- ("boost" ,boost)
- ("fuse" ,fuse)
- ("linux-pam" ,linux-pam)
- ("python" ,python-2)
- ("spdlog" ,spdlog)
- ("zlib" ,zlib)))
+ (list bdb
+ boost
+ fuse-2
+ linux-pam
+ python-2
+ spdlog
+ zlib))
(native-inputs
`(("asciidoc" ,asciidoc)
("googletest" ,(package-source googletest-1.7))
diff --git a/lizardfs-issues-found-on-Fedora-34-using-GCC-11.patch b/lizardfs-issues-found-on-Fedora-34-using-GCC-11.patch
new file mode 100644
index 0000000..55036a7
--- /dev/null
+++ b/lizardfs-issues-found-on-Fedora-34-using-GCC-11.patch
@@ -0,0 +1,111 @@
+From 1da538a07974b8b1afd2580af2828418cbdad42b Mon Sep 17 00:00:00 2001
+Message-ID: <1da538a07974b8b1afd2580af2828418cbdad42b.1699426938.git.efraim@flashner.co.il>
+From: Marcin Konarski <marcin.konarski@lizardfs.com>
+Date: Fri, 21 May 2021 12:36:56 +0200
+Subject: [PATCH] all: Fix build issues found on Fedora 34 using GCC 11.1.1
+
+Change-Id: I1c20e914d249d367d0a058de1102ae62dcaf6054
+---
+ src/common/ec_read_plan.h | 2 +-
+ src/common/flat_set_unittest.cc | 4 ++--
+ src/common/vector_range.h | 1 +
+ src/data/CMakeLists.txt | 25 +++++++++++++++++++++++
+ src/master/goal_config_loader_unittest.cc | 4 ++--
+ 5 files changed, 31 insertions(+), 5 deletions(-)
+
+diff --git a/src/common/ec_read_plan.h b/src/common/ec_read_plan.h
+index c96413cb..bda10cb5 100644
+--- a/src/common/ec_read_plan.h
++++ b/src/common/ec_read_plan.h
+@@ -132,7 +132,7 @@ protected:
+ }
+ }
+
+- for (const auto op : read_operations) {
++ for (auto const& op : read_operations) {
+ data_parts[op.first.getSlicePart()] = buffer + op.second.buffer_offset;
+ }
+
+diff --git a/src/common/flat_set_unittest.cc b/src/common/flat_set_unittest.cc
+index 9ad760c4..e50308eb 100644
+--- a/src/common/flat_set_unittest.cc
++++ b/src/common/flat_set_unittest.cc
+@@ -62,9 +62,9 @@ TEST(FlatSet, RedundantInsert) {
+ // const &
+ std::initializer_list<std::string> elems2 = {"0", "1", "2", "3", "4"};
+ flat_set<std::string> cs2(elems2);
+- for (const std::string &i : {"2", "4"}) {
++ for (char const* s : {"2", "4"}) {
+ EXPECT_EQ(cs2.size(), elems2.size());
+- cs2.insert(i);
++ cs2.insert(s);
+ EXPECT_EQ(cs2.size(), elems2.size());
+ }
+ }
+diff --git a/src/common/vector_range.h b/src/common/vector_range.h
+index f336e1ec..57bba8dd 100644
+--- a/src/common/vector_range.h
++++ b/src/common/vector_range.h
+@@ -22,6 +22,7 @@
+
+ #include <algorithm>
+ #include <cassert>
++#include <limits>
+ #include <stdexcept>
+
+ /*! \brief Class providing std::vector like interface to subrange of vector. */
+diff --git a/src/data/CMakeLists.txt b/src/data/CMakeLists.txt
+index 88c20d5d..bf69a5e2 100644
+--- a/src/data/CMakeLists.txt
++++ b/src/data/CMakeLists.txt
+@@ -16,3 +16,28 @@ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/mfschunkserver.cfg DESTINATION ${ETC_S
+ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/mfsmetalogger.cfg DESTINATION ${ETC_SUBDIR} RENAME mfsmetalogger.cfg.dist)
+
+ install(FILES lizardfs.completion DESTINATION etc/bash_completion.d RENAME lizardfs)
++
++if(BUILD_TESTS)
++ # Create a mock include dir.
++ # We do this because we want to preserve the proper include directives in the example code
++ # and still build this example program in the build step before the needed headers are installed.
++ file(MAKE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/include/lizardfs)
++ add_custom_command(
++ OUTPUT
++ ${CMAKE_CURRENT_BINARY_DIR}/include/lizardfs/lizardfs_c_api.h
++ ${CMAKE_CURRENT_BINARY_DIR}/include/lizardfs/lizardfs_error_codes.h
++ COMMAND ${CMAKE_COMMAND} -E create_symlink
++ ${CMAKE_SOURCE_DIR}/src/mount/client/lizardfs_c_api.h
++ ${CMAKE_CURRENT_BINARY_DIR}/include/lizardfs/lizardfs_c_api.h
++ COMMAND ${CMAKE_COMMAND} -E create_symlink
++ ${CMAKE_SOURCE_DIR}/src/common/lizardfs_error_codes.h
++ ${CMAKE_CURRENT_BINARY_DIR}/include/lizardfs/lizardfs_error_codes.h
++ )
++ add_executable(c-client-example
++ liblizardfs-client-example.c
++ ${CMAKE_CURRENT_BINARY_DIR}/include/lizardfs/lizardfs_c_api.h
++ ${CMAKE_CURRENT_BINARY_DIR}/include/lizardfs/lizardfs_error_codes.h)
++ target_include_directories(c-client-example PRIVATE ${CMAKE_CURRENT_BINARY_DIR}/include)
++ target_link_libraries(c-client-example lizardfs-client stdc++)
++ install(TARGETS c-client-example RUNTIME DESTINATION ${BIN_SUBDIR})
++endif()
+diff --git a/src/master/goal_config_loader_unittest.cc b/src/master/goal_config_loader_unittest.cc
+index 050e8a52..a236dba9 100644
+--- a/src/master/goal_config_loader_unittest.cc
++++ b/src/master/goal_config_loader_unittest.cc
+@@ -41,8 +41,8 @@ Goal::Slice createSlice(int type,
+ std::vector<std::map<std::string, int>> part_list) {
+ Goal::Slice slice{Goal::Slice::Type(type)};
+ int part_index = 0;
+- for (const auto &part : part_list) {
+- for (const auto label : part) {
++ for (auto const& part : part_list) {
++ for (auto const& label : part) {
+ slice[part_index][MediaLabel(label.first)] += label.second;
+ }
+ ++part_index;
+
+base-commit: 6f6fd530f8fa286fbfb6a050cacbba73e928bd26
+--
+Efraim Flashner <efraim@flashner.co.il> רנשלפ םירפא
+GPG key = A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351
+Confidentiality cannot be guaranteed on emails sent or received unencrypted
+