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authorEfraim Flashner2023-03-22 13:07:14 +0200
committerEfraim Flashner2023-03-22 13:07:14 +0200
commitb0bad6e497435e0e1f305dd7c9df23204e29f8aa (patch)
tree21e9dde0e893c178b33256f3085bb31387bdaf26
parent7aebbdf506136c9071ab91882010ca978f2aac4d (diff)
downloadguix-bioinformatics-b0bad6e497435e0e1f305dd7c9df23204e29f8aa.tar.gz
Add python-pyshexc-0.7.
* gn/packages/python.scm (python-pyshexc-0.7): New variable.
-rw-r--r--gn/packages/python.scm69
1 files changed, 69 insertions, 0 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index acfa6bc..b3aaec9 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -952,6 +952,75 @@ server.")
(ShExC) into @dfn{Python JSON Schema Binding} (pyjsg) objects.")
(license license:asl2.0)))
+(define-public python-pyshexc-0.7
+ (package
+ (inherit python-pyshexc)
+ (name "python-pyshexc")
+ (version "0.7.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/shexSpec/grammar")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name "shexspec-grammar" version))
+ (sha256
+ (base32 "08wsknjq8zyi3hk01w6yl6z8jld63l6l64n43gjhj0jphbm4s9iz"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ (substitute* "parsers/python/setup.cfg"
+ (("python-requires = 3") "python_requires = >=3.6"))))))
+ (arguments
+ `(#:tests? #f ; Tests try to access the internet.
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _
+ (chdir "parsers/python")
+ (setenv "PBR_VERSION" ,version)))
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (substitute* "tests/__init__.py"
+ (("schemas_base =.*")
+ (string-append "schemas_base = \""
+ (assoc-ref inputs "test-suite")
+ "/schemas\"\n")))
+ (substitute* "tests/test_shexr.py"
+ (("https://raw.githubusercontent.com/shexSpec/shexTest/master/validation/manifest")
+ (string-append (assoc-ref inputs "test-suite")
+ "/validation/manifest")))
+ (substitute* "tests/test_issue_9.py"
+ (("https://raw.githubusercontent.com/shexSpec/shexTest/master/schemas/1dotNS2.shex")
+ (search-input-file inputs "/schemas/1dotNS2.shex")))
+ (symlink (assoc-ref inputs "test-suite")
+ "../../../shexTest")
+ (invoke "python" "-m" "unittest" "discover" "-s" "tests")))))))
+ (propagated-inputs
+ (list python-antlr4-python3-runtime
+ python-certifi
+ python-jsonasobj
+ python-rdflib-shim
+ python-requests
+ python-shexjsg))
+ (native-inputs
+ `(("python-pbr" ,python-pbr)
+ ("python-unittest2" ,python-unittest2)
+ ("python-yadict-compare" ,python-yadict-compare)
+ ("test-suite"
+ ,(origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/shexSpec/shexTest")
+ (commit "v2.0.2")))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1x788nyrwycfr55wbg0ay6mc8mi6wwsg81h614rx9pw6rvrsppps"))))))
+ (home-page "https://github.com/shexSpec/grammar/tree/master/parsers/python")))
+
(define-public python-antlr4-python3-runtime
(package
(name "python-antlr4-python3-runtime")