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authorEfraim Flashner2022-11-30 10:54:03 +0200
committerEfraim Flashner2022-11-30 10:54:03 +0200
commita8481f8fda599be8af4c14663cc57e538f8117c3 (patch)
tree2622a23a5f6d94f9bc195a455542116f16c2ffcc
parentad6055084e48faa7563615c78392fcf469100140 (diff)
downloadguix-bioinformatics-a8481f8fda599be8af4c14663cc57e538f8117c3.tar.gz
gn: Remove upstreamed packages
-rw-r--r--gn/packages/bioinformatics.scm4
-rw-r--r--gn/packages/crates-io.scm151
2 files changed, 2 insertions, 153 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 76b93d9..19cc1ff 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -489,7 +489,7 @@ reads.")
(arguments
`(#:install-source? #f
#:cargo-inputs
- (("rust-clap" ,rust-clap-3.1)
+ (("rust-clap" ,rust-clap-3)
("rust-rustc-hash" ,rust-rustc-hash-1)
("rust-regex" ,rust-regex-1)
("rust-handlegraph" ,rust-handlegraph-0.7)
@@ -670,7 +670,7 @@ types of datasets: short genomes (viruses) as well as long (humans).")
(("rust-bindgen" ,rust-bindgen-0.58)
("rust-bgzip" ,rust-bgzip-0.2)
("rust-byteorder" ,rust-byteorder-1)
- ("rust-clap" ,rust-clap-3.1)
+ ("rust-clap" ,rust-clap-3)
("rust-cuckoofilter" ,rust-cuckoofilter-0.5)
("rust-flate2" ,rust-flate2-1)
("rust-libc" ,rust-libc-0.2)
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm
index 60b6229..342aca4 100644
--- a/gn/packages/crates-io.scm
+++ b/gn/packages/crates-io.scm
@@ -372,51 +372,6 @@ Python code from a Rust binary is also supported.")
(description "This package provides succinct data structures for Rust.")
(license (list license:expat license:asl2.0))))
-(define-public rust-terminal-size-0.2
- (package
- (name "rust-terminal-size")
- (version "0.2.2")
- (source (origin
- (method url-fetch)
- (uri (crate-uri "terminal-size" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "0yhza8sc6jkka6j0nq5sl749ckx1jagvxp3b38yhh4px6k291jj0"))))
- (build-system cargo-build-system)
- (arguments
- `(#:skip-build? #t
- ;#:cargo-inputs
- ;(("rust-rustix" ,rust-rustix-0.35)
- ; ("rust-windows-sys" ,rust-windows-sys-0.42))
- ))
- (home-page "https://github.com/eminence/terminal-size")
- (synopsis "Gets the size of your Linux or Windows terminal")
- (description "Gets the size of your Linux or Windows terminal")
- (license (list license:expat license:asl2.0))))
-
-(define-public rust-unic-emoji-char-0.9
- (package
- (name "rust-unic-emoji-char")
- (version "0.9.0")
- (source (origin
- (method url-fetch)
- (uri (crate-uri "unic-emoji-char" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "0ka9fr7s6lv0z43r9xphg9injn35pfxf9g9q18ki0wl9d0g241qb"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-unic-char-property" ,rust-unic-char-property-0.9)
- ("rust-unic-char-range" ,rust-unic-char-range-0.9)
- ("rust-unic-ucd-version" ,rust-unic-ucd-version-0.9))))
- (home-page "https://github.com/open-i18n/rust-unic/")
- (synopsis "UNIC â Unicode Emoji â Emoji Character Properties")
- (description "UNIC â Unicode Emoji â Emoji Character Properties")
- (license (list license:expat license:asl2.0))))
-
(define-public rust-clap-for-jrep
(package
(name "rust-clap")
@@ -520,50 +475,6 @@ or any combination.")
(description "Rust CLI tools for manipulation of Jupyter Notebooks.")
(license #f)))) ; There is no license.
-;; replace fields with those from upstream
-(define-public rust-clap-3.1
- (package
- (name "rust-clap")
- (version "3.1.6")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "clap" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "08q1hkksfixybnrwrpm44xq028wbn9yr2hnzrax9hihyq8v39jfq"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-atty" ,rust-atty-0.2)
- ("rust-backtrace" ,rust-backtrace-0.3)
- ("rust-bitflags" ,rust-bitflags-1)
- ("rust-clap-derive" ,rust-clap-derive-3.1)
- ("rust-indexmap" ,rust-indexmap-1)
- ("rust-lazy-static" ,rust-lazy-static-1)
- ("rust-os-str-bytes" ,rust-os-str-bytes-6)
- ("rust-regex" ,rust-regex-1)
- ("rust-strsim" ,rust-strsim-0.10)
- ("rust-termcolor" ,rust-termcolor-1)
- ("rust-terminal-size" ,rust-terminal-size-0.1)
- ("rust-textwrap" ,rust-textwrap-0.15)
- ("rust-unicase" ,rust-unicase-2)
- ("rust-yaml-rust" ,rust-yaml-rust-0.4))
- #:cargo-development-inputs
- (("rust-criterion" ,rust-criterion-0.3)
- ("rust-lazy-static" ,rust-lazy-static-1)
- ("rust-regex" ,rust-regex-1)
- ("rust-rustversion" ,rust-rustversion-1)
- ("rust-trybuild" ,rust-trybuild-1)
- ("rust-trycmd" ,rust-trycmd-0.12))))
- (home-page "https://github.com/clap-rs/clap")
- (synopsis
- "A simple to use, efficient, and full-featured Command Line Argument Parser")
- (description
- "This package provides a simple to use, efficient, and full-featured Command Line
- Argument Parser")
- (license (list license:expat license:asl2.0))))
-
(define-public rust-clap-4
(package
(name "rust-clap")
@@ -608,34 +519,6 @@ or any combination.")
Argument Parser")
(license (list license:expat license:asl2.0))))
-;; ready to upstream, WITH rust-clap-derive
-;; replace fields with those from upstream.
-(define-public rust-clap-derive-3.1
- (package
- (name "rust-clap-derive")
- (version "3.1.4")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "clap-derive" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "05mz2y6k73wc1gvv9r4mllfqslzvlwkvx77lk7769ag1xlwd15fs"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-heck" ,rust-heck-0.4)
- ("rust-proc-macro-error" ,rust-proc-macro-error-1)
- ("rust-proc-macro2" ,rust-proc-macro2-1)
- ("rust-quote" ,rust-quote-1)
- ("rust-syn" ,rust-syn-1))))
- (home-page "https://github.com/clap-rs/clap/tree/master/clap_derive")
- (synopsis
- "Parse command line argument by defining a struct, derive crate.")
- (description
- "Parse command line argument by defining a struct, derive crate.")
- (license (list license:expat license:asl2.0))))
-
(define-public rust-clap-derive-4
(package
(name "rust-clap-derive")
@@ -662,40 +545,6 @@ or any combination.")
"Parse command line argument by defining a struct, derive crate.")
(license (list license:expat license:asl2.0))))
-(define-public rust-textwrap-0.15
- (package
- (name "rust-textwrap")
- (version "0.15.0")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "textwrap" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "1yw513k61lfiwgqrfvsjw1a5wpvm0azhpjr2kr0jhnq9c56is55i"))))
- (build-system cargo-build-system)
- (arguments
- `(#:skip-build? #t ; Not all inputs packaged
- ;#:tests? #f ; Skip tests for now
- #:cargo-inputs
- (("rust-hyphenation" ,rust-hyphenation-0.8)
- ("rust-smawk" ,rust-smawk-0.3)
- ("rust-terminal-size" ,rust-terminal-size-0.1)
- ("rust-unicode-linebreak" ,rust-unicode-linebreak-0.1)
- ("rust-unicode-width" ,rust-unicode-width-0.1))
- #:cargo-development-inputs
- (("rust-criterion" ,rust-criterion-0.3)
- ;("rust-lipsum" ,rust-lipsum-0.8)
- ("rust-termion" ,rust-termion-1)
- ;("rust-unic-emoji-char" ,rust-unic-emoji-char-0.9)
- ("rust-version-sync" ,rust-version-sync-0.9))))
- (home-page "https://github.com/mgeisler/textwrap")
- (synopsis
- "Powerful library for word wrapping, indenting, and dedenting strings")
- (description
- "Powerful library for word wrapping, indenting, and dedenting strings")
- (license license:expat)))
-
(define-public rust-trycmd-0.12
(package
(name "rust-trycmd")