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author | Efraim Flashner | 2022-11-30 10:54:03 +0200 |
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committer | Efraim Flashner | 2022-11-30 10:54:03 +0200 |
commit | a8481f8fda599be8af4c14663cc57e538f8117c3 (patch) | |
tree | 2622a23a5f6d94f9bc195a455542116f16c2ffcc | |
parent | ad6055084e48faa7563615c78392fcf469100140 (diff) | |
download | guix-bioinformatics-a8481f8fda599be8af4c14663cc57e538f8117c3.tar.gz |
gn: Remove upstreamed packages
-rw-r--r-- | gn/packages/bioinformatics.scm | 4 | ||||
-rw-r--r-- | gn/packages/crates-io.scm | 151 |
2 files changed, 2 insertions, 153 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 76b93d9..19cc1ff 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -489,7 +489,7 @@ reads.") (arguments `(#:install-source? #f #:cargo-inputs - (("rust-clap" ,rust-clap-3.1) + (("rust-clap" ,rust-clap-3) ("rust-rustc-hash" ,rust-rustc-hash-1) ("rust-regex" ,rust-regex-1) ("rust-handlegraph" ,rust-handlegraph-0.7) @@ -670,7 +670,7 @@ types of datasets: short genomes (viruses) as well as long (humans).") (("rust-bindgen" ,rust-bindgen-0.58) ("rust-bgzip" ,rust-bgzip-0.2) ("rust-byteorder" ,rust-byteorder-1) - ("rust-clap" ,rust-clap-3.1) + ("rust-clap" ,rust-clap-3) ("rust-cuckoofilter" ,rust-cuckoofilter-0.5) ("rust-flate2" ,rust-flate2-1) ("rust-libc" ,rust-libc-0.2) diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm index 60b6229..342aca4 100644 --- a/gn/packages/crates-io.scm +++ b/gn/packages/crates-io.scm @@ -372,51 +372,6 @@ Python code from a Rust binary is also supported.") (description "This package provides succinct data structures for Rust.") (license (list license:expat license:asl2.0)))) -(define-public rust-terminal-size-0.2 - (package - (name "rust-terminal-size") - (version "0.2.2") - (source (origin - (method url-fetch) - (uri (crate-uri "terminal-size" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "0yhza8sc6jkka6j0nq5sl749ckx1jagvxp3b38yhh4px6k291jj0")))) - (build-system cargo-build-system) - (arguments - `(#:skip-build? #t - ;#:cargo-inputs - ;(("rust-rustix" ,rust-rustix-0.35) - ; ("rust-windows-sys" ,rust-windows-sys-0.42)) - )) - (home-page "https://github.com/eminence/terminal-size") - (synopsis "Gets the size of your Linux or Windows terminal") - (description "Gets the size of your Linux or Windows terminal") - (license (list license:expat license:asl2.0)))) - -(define-public rust-unic-emoji-char-0.9 - (package - (name "rust-unic-emoji-char") - (version "0.9.0") - (source (origin - (method url-fetch) - (uri (crate-uri "unic-emoji-char" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "0ka9fr7s6lv0z43r9xphg9injn35pfxf9g9q18ki0wl9d0g241qb")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-unic-char-property" ,rust-unic-char-property-0.9) - ("rust-unic-char-range" ,rust-unic-char-range-0.9) - ("rust-unic-ucd-version" ,rust-unic-ucd-version-0.9)))) - (home-page "https://github.com/open-i18n/rust-unic/") - (synopsis "UNIC â Unicode Emoji â Emoji Character Properties") - (description "UNIC â Unicode Emoji â Emoji Character Properties") - (license (list license:expat license:asl2.0)))) - (define-public rust-clap-for-jrep (package (name "rust-clap") @@ -520,50 +475,6 @@ or any combination.") (description "Rust CLI tools for manipulation of Jupyter Notebooks.") (license #f)))) ; There is no license. -;; replace fields with those from upstream -(define-public rust-clap-3.1 - (package - (name "rust-clap") - (version "3.1.6") - (source - (origin - (method url-fetch) - (uri (crate-uri "clap" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "08q1hkksfixybnrwrpm44xq028wbn9yr2hnzrax9hihyq8v39jfq")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-atty" ,rust-atty-0.2) - ("rust-backtrace" ,rust-backtrace-0.3) - ("rust-bitflags" ,rust-bitflags-1) - ("rust-clap-derive" ,rust-clap-derive-3.1) - ("rust-indexmap" ,rust-indexmap-1) - ("rust-lazy-static" ,rust-lazy-static-1) - ("rust-os-str-bytes" ,rust-os-str-bytes-6) - ("rust-regex" ,rust-regex-1) - ("rust-strsim" ,rust-strsim-0.10) - ("rust-termcolor" ,rust-termcolor-1) - ("rust-terminal-size" ,rust-terminal-size-0.1) - ("rust-textwrap" ,rust-textwrap-0.15) - ("rust-unicase" ,rust-unicase-2) - ("rust-yaml-rust" ,rust-yaml-rust-0.4)) - #:cargo-development-inputs - (("rust-criterion" ,rust-criterion-0.3) - ("rust-lazy-static" ,rust-lazy-static-1) - ("rust-regex" ,rust-regex-1) - ("rust-rustversion" ,rust-rustversion-1) - ("rust-trybuild" ,rust-trybuild-1) - ("rust-trycmd" ,rust-trycmd-0.12)))) - (home-page "https://github.com/clap-rs/clap") - (synopsis - "A simple to use, efficient, and full-featured Command Line Argument Parser") - (description - "This package provides a simple to use, efficient, and full-featured Command Line - Argument Parser") - (license (list license:expat license:asl2.0)))) - (define-public rust-clap-4 (package (name "rust-clap") @@ -608,34 +519,6 @@ or any combination.") Argument Parser") (license (list license:expat license:asl2.0)))) -;; ready to upstream, WITH rust-clap-derive -;; replace fields with those from upstream. -(define-public rust-clap-derive-3.1 - (package - (name "rust-clap-derive") - (version "3.1.4") - (source - (origin - (method url-fetch) - (uri (crate-uri "clap-derive" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "05mz2y6k73wc1gvv9r4mllfqslzvlwkvx77lk7769ag1xlwd15fs")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-heck" ,rust-heck-0.4) - ("rust-proc-macro-error" ,rust-proc-macro-error-1) - ("rust-proc-macro2" ,rust-proc-macro2-1) - ("rust-quote" ,rust-quote-1) - ("rust-syn" ,rust-syn-1)))) - (home-page "https://github.com/clap-rs/clap/tree/master/clap_derive") - (synopsis - "Parse command line argument by defining a struct, derive crate.") - (description - "Parse command line argument by defining a struct, derive crate.") - (license (list license:expat license:asl2.0)))) - (define-public rust-clap-derive-4 (package (name "rust-clap-derive") @@ -662,40 +545,6 @@ or any combination.") "Parse command line argument by defining a struct, derive crate.") (license (list license:expat license:asl2.0)))) -(define-public rust-textwrap-0.15 - (package - (name "rust-textwrap") - (version "0.15.0") - (source - (origin - (method url-fetch) - (uri (crate-uri "textwrap" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "1yw513k61lfiwgqrfvsjw1a5wpvm0azhpjr2kr0jhnq9c56is55i")))) - (build-system cargo-build-system) - (arguments - `(#:skip-build? #t ; Not all inputs packaged - ;#:tests? #f ; Skip tests for now - #:cargo-inputs - (("rust-hyphenation" ,rust-hyphenation-0.8) - ("rust-smawk" ,rust-smawk-0.3) - ("rust-terminal-size" ,rust-terminal-size-0.1) - ("rust-unicode-linebreak" ,rust-unicode-linebreak-0.1) - ("rust-unicode-width" ,rust-unicode-width-0.1)) - #:cargo-development-inputs - (("rust-criterion" ,rust-criterion-0.3) - ;("rust-lipsum" ,rust-lipsum-0.8) - ("rust-termion" ,rust-termion-1) - ;("rust-unic-emoji-char" ,rust-unic-emoji-char-0.9) - ("rust-version-sync" ,rust-version-sync-0.9)))) - (home-page "https://github.com/mgeisler/textwrap") - (synopsis - "Powerful library for word wrapping, indenting, and dedenting strings") - (description - "Powerful library for word wrapping, indenting, and dedenting strings") - (license license:expat))) - (define-public rust-trycmd-0.12 (package (name "rust-trycmd") |