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| author | Efraim Flashner | 2023-03-22 13:09:05 +0200 |
|---|---|---|
| committer | Efraim Flashner | 2023-03-22 13:09:05 +0200 |
| commit | 4e1bcead4b282c95286cfaed9e23072a5abadfe4 (patch) | |
| tree | 5a529bdd88ba308022c31c7c1c749116466d2d34 | |
| parent | 80c23f2fcbcfdb872a251163ff510f58a7b33654 (diff) | |
| download | guix-bioinformatics-4e1bcead4b282c95286cfaed9e23072a5abadfe4.tar.gz | |
python-pyshex: Downgrade to 0.7.14.
* gn/packages/python.scm (python-pyshex): Downgrade to 0.7.14.
[arguments]: Disable tests. Add phase to fix compatibility with
rdflib-6. Adjust custom 'check phase.
[propagated-inputs]: Remove python-chardet. Replace python-pyshexc with
python-pyshexc-0.7, python-rdflib-shim with python-rdflib,
python-sparqlsluper with python-sparql-slurper.
| -rw-r--r-- | gn/packages/python.scm | 23 |
1 files changed, 14 insertions, 9 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm index 26b73b2..46aecd8 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -907,32 +907,37 @@ server.") (define-public python-pyshex (package (name "python-pyshex") - (version "0.8.1") + (version "0.7.14") (source (origin (method url-fetch) (uri (pypi-uri "PyShEx" version)) (sha256 - (base32 "1l3hprspx5l4zl28p1m79mwfxy5c86601jq3x3damyi7zr2lsp1w")))) + (base32 "1fy664bh6hpmr4cf49fwwxng36kv7s6b2986hbv0cqcypc4ri2cs")))) (arguments - '(#:phases + '(#:tests? #f ; Tests try to use the internet. + #:phases (modify-phases %standard-phases + (add-after 'unpack 'drop-rdflib-namespace-rdfnamespace + (lambda _ + ;; _RDFNamespace is in rdflib-5 + ;; https://github.com/hsolbrig/PyShEx/commit/d138a5b4f2249212f2141b7b9bbaff6696ee9415 + (substitute* "pyshex/prefixlib.py" + (("XMLNS, _RDFNamespace") "XMLNS")))) (replace 'check (lambda* (#:key inputs outputs tests? #:allow-other-keys) (when tests? (add-installed-pythonpath inputs outputs) (setenv "SKIP_EXTERNAL_URLS" "true") - (invoke "python" "-m" "unittest" "-k" - "test_sparql_options"))))))) + (invoke "python" "-m" "unittest"))))))) (build-system python-build-system) (propagated-inputs (list python-cfgraph - python-chardet - python-pyshexc - python-rdflib-shim + python-pyshexc-0.7 + python-rdflib python-requests python-shexjsg - python-sparqlslurper + python-sparql-slurper python-sparqlwrapper python-urllib3)) (native-inputs |