about summary refs log tree commit diff
diff options
context:
space:
mode:
authorPjotr Prins2015-09-18 13:38:48 +0900
committerPjotr Prins2015-09-18 13:38:48 +0900
commitc2759f4efae09aded29483061742f50ebb1a63c2 (patch)
tree2b48faeae608f346f21082e3bc83e2546bbbf762
parenta1adb988a53a43c17d45c0ed5499fa6bf46a8d0c (diff)
downloadguix-bioinformatics-c2759f4efae09aded29483061742f50ebb1a63c2.tar.gz
Adding python-avro
-rw-r--r--gn/packages/cwl.scm7
-rw-r--r--gn/packages/python.scm27
2 files changed, 31 insertions, 3 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm
index e58022f..b8f3566 100644
--- a/gn/packages/cwl.scm
+++ b/gn/packages/cwl.scm
@@ -31,7 +31,9 @@
             "1kqxc6nvq4nr8qdv39ycdi6fhzaipgjpmbghsz94ij6jhf5r3dq2"))))
     (build-system python-build-system)
     (propagated-inputs
-     `(("python-schema-salad" ,python-schema-salad)))
+     `(("python-schema-salad" ,python-schema-salad)
+       ("python-avro" ,python-avro)
+       ))
     (inputs
       `(("python-setuptools" ,python-setuptools)))
     (home-page
@@ -63,10 +65,9 @@
       `(("python-cython" ,python-cython)
        ("python-setuptools" ,python-setuptools)
        ("python-rdflib-jsonld" ,python-rdflib-jsonld)
-       ("python-rdflib-4.2" ,python-rdflib-4.2)
        ("python-mistune" ,python-mistune)))
     (propagated-inputs
-     `(("python-rdflib" ,python-rdflib)))
+     `(("python-rdflib-4.2" ,python-rdflib-4.2)))
     (home-page
       "https://github.com/common-workflow-language/common-workflow-language")
     (synopsis
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index a8b8a62..1663d96 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -60,6 +60,10 @@
     (arguments `(#:tests? #f)) ;; No tests.
     (inputs
       `(("python-setuptools" ,python-setuptools)))
+    (propagated-inputs
+     `(("python-rdflib-4.2" ,python-rdflib-4.2)
+       ("python-pyparsing" ,python-pyparsing)
+))
     (home-page
       "https://github.com/RDFLib/rdflib-jsonld")
     (synopsis
@@ -100,3 +104,26 @@ powerful language for representing information.")
     (license (license:non-copyleft "file://LICENSE"
                            "See LICENSE in the distribution."))))
 
+(define-public python-avro
+(package
+  (name "python-avro")
+  (version "1.7.7")
+  (source
+    (origin
+      (method url-fetch)
+      (uri (string-append
+             "https://pypi.python.org/packages/source/a/avro/avro-"
+             version
+             ".tar.gz"))
+      (sha256
+        (base32
+          "0n21lfclah7bmqnnqfqmpsrimz0s86qkxyn972jynq234n1lyynf"))))
+  (build-system python-build-system)
+  (inputs
+    `(("python-setuptools" ,python-setuptools)))
+  (home-page "http://hadoop.apache.org/avro")
+  (synopsis
+    "Avro is a serialization and RPC framework.")
+  (description
+    "Avro is a serialization and RPC framework.")
+  (license #f)))