From 05191fa146fac31fd079c50bf6bcc4983f2f0792 Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Wed, 28 Aug 2024 16:14:52 -0500 Subject: Rework UI: present menus on the left, content on the right. --- uploader/templates/index.html | 80 ++++++------------------------------------- 1 file changed, 11 insertions(+), 69 deletions(-) (limited to 'uploader/templates/index.html') diff --git a/uploader/templates/index.html b/uploader/templates/index.html index 94060b7..e99b031 100644 --- a/uploader/templates/index.html +++ b/uploader/templates/index.html @@ -1,84 +1,26 @@ {%extends "base.html"%} {%from "flash_messages.html" import flash_all_messages%} -{%block title%}Data Upload{%endblock%} +{%block title%}Home{%endblock%} -{%block contents%} -
- {{flash_all_messages()}} - -

data upload

- -
-

Each of the sections below gives you a different option for data upload. - Please read the documentation for each section carefully to understand what - each section is about.

-
-
- -
-

R/qtl2 Bundles

+{%block pagetitle%}Home{%endblock%} -
-

This feature combines and extends the two upload methods below. Instead of - uploading one item at a time, the R/qtl2 bundle you upload can contain both - the genotypes data (samples/individuals/cases and their data) and the - expression data.

-

The R/qtl2 bundle, additionally, can contain extra metadata, that neither - of the methods below can handle.

- - - -
-
+{%block breadcrumb%} + +{%endblock%} +{%block contents%}
-

Expression Data

-
-

This feature enables you to upload expression data. It expects the data to - be in tab-separated values (TSV) files. The data should be - a simple matrix of phenotype × sample, i.e. The first column is a - list of the phenotypes and the first row is a list of - samples/cases.

- -

If you haven't done so please go to this page to learn the requirements for - file formats and helpful suggestions to enter your data in a fast and easy - way.

- -
    -
  1. PLEASE REVIEW YOUR DATA.Make sure your data complies - with our system requirements. ( - Help - )
  2. -
  3. UPLOAD YOUR DATA FOR DATA VERIFICATION. We accept - .csv, .txt and .zip - files (Help)
  4. -
-
- - upload expression data -
+

Welcome to the GeneNetwork Data Quality Control and Upload System. This system is provided to help in uploading your data onto GeneNetwork where you can do analysis on it.

-
-

samples/cases

+

Click on the menu items on the left to select the kind of data you want to upload.

-
-

For the expression data above, you need the samples/cases in your file to - already exist in the GeneNetwork database. If there are any samples that do - not already exist the upload of the expression data will fail.

-

This section gives you the opportunity to upload any missing samples

+ {%block extrapageinfo%}{%endblock%}
- - upload Samples/Cases
{%endblock%} -- cgit v1.2.3