From 27eec3300eddbc17214b3ff3ffbd8bea867db401 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 20 Sep 2024 16:10:50 -0500
Subject: Initialise UI for managing genotype datasets.

---
 uploader/templates/genotypes/list-genotypes.html | 10 ++++
 uploader/templates/genotypes/view-dataset.html   | 61 ++++++++++++++++++++++++
 2 files changed, 71 insertions(+)
 create mode 100644 uploader/templates/genotypes/view-dataset.html

(limited to 'uploader/templates/genotypes')

diff --git a/uploader/templates/genotypes/list-genotypes.html b/uploader/templates/genotypes/list-genotypes.html
index 3780f85..864e1ec 100644
--- a/uploader/templates/genotypes/list-genotypes.html
+++ b/uploader/templates/genotypes/list-genotypes.html
@@ -129,6 +129,16 @@
       create new genotype dataset</a></p>
   {%endif%}
 </div>
+<div class="row text-warning">
+  <p>
+    <span class="glyphicon glyphicon-exclamation-sign"></span>
+    <strong>NOTE</strong>: Currently the GN2 (and related) system(s) expect a
+    single genotype dataset. If there is more than one, the system apparently
+    fails in unpredictable ways.
+  </p>
+  <p>Fix this to allow multiple datasets, each with a different assembly from
+    all the rest.</p>
+</div>
 {%endblock%}
 
 {%block sidebarcontents%}
diff --git a/uploader/templates/genotypes/view-dataset.html b/uploader/templates/genotypes/view-dataset.html
new file mode 100644
index 0000000..e7ceb36
--- /dev/null
+++ b/uploader/templates/genotypes/view-dataset.html
@@ -0,0 +1,61 @@
+{%extends "genotypes/base.html"%}
+{%from "flash_messages.html" import flash_all_messages%}
+{%from "populations/macro-display-population-card.html" import display_population_card%}
+
+{%block title%}Genotypes: View Dataset{%endblock%}
+
+{%block pagetitle%}Genotypes: View Dataset{%endblock%}
+
+{%block lvl4_breadcrumbs%}
+<li {%if activelink=="view-dataset"%}
+    class="breadcrumb-item active"
+    {%else%}
+    class="breadcrumb-item"
+    {%endif%}>
+  <a href="{{url_for('species.populations.genotypes.view_dataset',
+           species_id=species.SpeciesId,
+           population_id=population.Id,
+           dataset_id=dataset.Id)}}">view dataset</a>
+</li>
+{%endblock%}
+
+{%block contents%}
+{{flash_all_messages()}}
+
+<div class="row">
+  <h2>Genotype Dataset Details</h2>
+  <table class="table">
+    <thead>
+      <tr>
+        <th>Name</th>
+        <th>Full Name</th>
+      </tr>
+    </thead>
+
+    <tbody>
+      <tr>
+        <td>{{dataset.Name}}</td>
+        <td>{{dataset.FullName}}</td>
+      </tr>
+    </tbody>
+  </table>
+</div>
+
+<div class="row text-warning">
+  <h2>Assembly Details</h2>
+
+  <p>Maybe include the assembly details here if found to be necessary.</p>
+</div>
+
+<div class="row">
+  <h2>Genotype Data</h2>
+
+  <p class="text-danger">
+    Provide link to enable uploading of genotype data here.</p>
+</div>
+
+{%endblock%}
+
+{%block sidebarcontents%}
+{{display_population_card(species, population)}}
+{%endblock%}
-- 
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