From 31fb2794ffd4b17be35a2e122a8c6605aebaf65b Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Thu, 13 Jun 2024 12:27:25 -0500
Subject: Update the help text.

---
 qc_app/templates/data_review.html | 24 ++++++++++++++++--------
 1 file changed, 16 insertions(+), 8 deletions(-)

(limited to 'qc_app')

diff --git a/qc_app/templates/data_review.html b/qc_app/templates/data_review.html
index 7ac01ba..b7528fd 100644
--- a/qc_app/templates/data_review.html
+++ b/qc_app/templates/data_review.html
@@ -5,7 +5,7 @@
 {%block contents%}
 <h1 class="heading">data review</h1>
 
-<div id="explainer">
+<div class="row">
   <h2 id="data-concerns">Data Concerns</h2>
   <p>The following are some of the requirements that the data in your file
     <strong>MUST</strong> fulfil before it is considered valid for this system:
@@ -19,11 +19,17 @@
 	  all other lines in the file.</li>
 	<li>Each heading value in the first row MUST appear in the first row
 	  <strong>ONE AND ONLY ONE</strong> time</li>
-	<li>The strain headers in your first row will be against a source of truth
-	  (<a href="https://gitlab.com/fredmanglis/gnqc_py/-/blob/main/etc/strains.csv"
-	      title="list of expected strains">see strains.csv [1.7M]</a>).<br />
-	  Pick the strain names from the <strong>'Name'</strong> and
-	  <strong>'Name2'</strong> fields.</li>
+	<li>The sample/cases (previously 'strains') headers in your first row will be
+          against those in the <a href="https://genenetwork.org"
+                                  title="Link to the GeneNetwork service">
+            GeneNetwork</a> database.<br />
+          <small class="text-muted">
+            If you encounter an error saying your sample(s)/case(s) do not exist
+            in the GeneNetwork database, then you will have to use the
+            <a href="{{url_for('samples.select_species')}}"
+               title="Upload samples/cases feature">Upload Samples/Cases</a>
+            option on this system to upload them.
+          </small>
       </ul>
     </li>
 
@@ -44,14 +50,16 @@
 	    <li>when checking a standard error file decimal numbers must have six or
 	      greater decimal places to the right of the decimal point.</li>
 	    <li>there must be a number to the left side of the decimal place
-	      (e.g. 0.55555 is allowed but .55555 is not).<li>
+	      (e.g. 0.55555 is allowed but .55555 is not).</li>
 	  </ul>
 	</li>
       </ol>
     </li>
   </ol>
+</div>
+
 
-  
+<div class="row">
   <h2 id="file-types">Supported File Types</h2>
   We support the following file types:
 
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