From 4729abd0ab7a8fbeb700a278ac8bdfcf62ab79ac Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Sat, 10 Feb 2024 06:57:23 +0300
Subject: Collect and display errors on 'geno' files in the bundle.

---
 qc_app/upload/rqtl2.py | 6 ++++++
 1 file changed, 6 insertions(+)

(limited to 'qc_app/upload')

diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 4b00891..c45952c 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -207,6 +207,12 @@ def rqtl2_bundle_qc_status(jobid: UUID):
                                        job=thejob,
                                        errorsgeneric=json.loads(
                                            thejob.get("errors-generic", "[]")),
+                                       errorsgeno=json.loads(
+                                           thejob.get("errors-geno", "[]")),
+                                       errorspheno=json.loads(
+                                           thejob.get("errors-pheno", "[]")),
+                                       errorsphenocovar=json.loads(
+                                           thejob.get("errors-phenocovar", "[]")),
                                        messages=logmessages)
             if jobstatus == "success":
                 jobmeta = json.loads(thejob["job-metadata"])
-- 
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