From f95037b93329d5a4953b81ba1b58e4028a6274e8 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 28 Aug 2024 17:40:56 -0500
Subject: Fix imports, and minor bugs.

---
 r_qtl/r_qtl2_qc.py                | 3 ++-
 uploader/base_routes.py           | 6 +++++-
 uploader/expression_data/index.py | 3 +--
 3 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/r_qtl/r_qtl2_qc.py b/r_qtl/r_qtl2_qc.py
index 6f7b374..7b26b50 100644
--- a/r_qtl/r_qtl2_qc.py
+++ b/r_qtl/r_qtl2_qc.py
@@ -8,6 +8,7 @@ from r_qtl import r_qtl2 as rqtl2
 from r_qtl import exceptions as rqe
 from r_qtl.r_qtl2 import FILE_TYPES
 from r_qtl.fileerrors import MissingFile
+from r_qtl.exceptions import InvalidFormat
 
 from quality_control.errors import InvalidValue
 from quality_control.checks import decimal_points_error
@@ -86,7 +87,7 @@ def missing_files(bundlesrc: Union[Path, ZipFile]) -> tuple[tuple[str, str], ...
         return __missing_from_zipfile__(bundlesrc, cdata)
     if isinstance(bundlesrc, Path):
         if is_zipfile(bundlesrc):
-            return __missing_from_zipfile__(ZipFile(bundlesrc, cdata))
+            return __missing_from_zipfile__(ZipFile(bundlesrc), cdata)
         if bundlesrc.is_dir():
             return __missing_from_dirpath__(bundlesrc, cdata)
     raise InvalidFormat(
diff --git a/uploader/base_routes.py b/uploader/base_routes.py
index 39db31f..88247b2 100644
--- a/uploader/base_routes.py
+++ b/uploader/base_routes.py
@@ -1,7 +1,11 @@
 """Basic routes required for all pages"""
 import os
 
-from flask import Blueprint, render_template, send_from_directory
+from flask import (
+    Blueprint,
+    render_template,
+    current_app as app,
+    send_from_directory)
 
 from uploader.oauth2.client import user_logged_in
 
diff --git a/uploader/expression_data/index.py b/uploader/expression_data/index.py
index a334c51..799989e 100644
--- a/uploader/expression_data/index.py
+++ b/uploader/expression_data/index.py
@@ -12,8 +12,7 @@ from flask import (
     redirect,
     Blueprint,
     render_template,
-    current_app as app,
-    send_from_directory)
+    current_app as app)
 
 from uploader.db import species
 from uploader.authorisation import require_login
-- 
cgit v1.2.3