From c35d84fbe327bae00361e2e09a56090aa2e3c72f Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 26 Mar 2025 13:08:10 -0500
Subject: Replaces empty strings with None

---
 scripts/phenotypes_bulk_edit.py | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/scripts/phenotypes_bulk_edit.py b/scripts/phenotypes_bulk_edit.py
index 6e5d416..0ced2ab 100644
--- a/scripts/phenotypes_bulk_edit.py
+++ b/scripts/phenotypes_bulk_edit.py
@@ -106,7 +106,10 @@ def read_file(filepath: Path) -> Iterator[str]:
                 count = count + 1
                 continue
 
-            _dict = dict(zip(headers, fields))
+            _dict = dict(zip(
+                headers,
+                ((None if item.strip() == "" else item.strip())
+                 for item in fields)))
             _pheno, _xref = _dict.pop("UniqueIdentifier").split("::")
             _dict["phenotype_id"] = int(_pheno.split(":")[1])
             _dict["xref_id"] = int(_xref.split(":")[1])
-- 
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