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gn-uploader: Data uploader for GeneNetwork
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2025-07-14
Refactor out common functionality into separate function.
Frederick Muriuki Muriithi
2025-07-14
Do not enter IDs in files in the description field.
Frederick Muriuki Muriithi
2025-07-02
Update descriptions and abbreviations
Frederick Muriuki Muriithi
2025-07-01
Bugfix: The value needs to be a tuple or list.
Frederick Muriuki Muriithi
2025-07-01
Ignore any optional files that are not provided.
Frederick Muriuki Muriithi
2025-07-01
Remove unused feature
Frederick Muriuki Muriithi
2025-06-30
Allow independent transposition of each file
Frederick Muriuki Muriithi
2025-06-26
Narrow search to only uploaded traits.
Frederick Muriuki Muriithi
2025-06-24
Use positional parameters rather than named ones.
Frederick Muriuki Muriithi
2025-06-24
Use pathlib.Path object for file paths.
Frederick Muriuki Muriithi
2025-06-17
Allow users to provide transposed files.
Frederick Muriuki Muriithi
2025-06-10
Display the success page.
Frederick Muriuki Muriithi
2025-06-10
Pass on the publication to the next job.
Frederick Muriuki Muriithi
2025-06-10
Bug: Fix logging.
Frederick Muriuki Muriithi
2025-06-10
Provide handler for `load-new-phenotypes-data` jobs.
Frederick Muriuki Muriithi
2025-06-10
On success, redirect to job status check page.
Frederick Muriuki Muriithi
2025-06-10
Display the error.
Frederick Muriuki Muriithi
2025-06-10
Set loglevel for background job's launcher.
Frederick Muriuki Muriithi
2025-06-05
Request token for use with script to update authorisations
Frederick Muriuki Muriithi
2025-06-03
Save data with `LOAD DATA INFILE …` query
Frederick Muriuki Muriithi
2025-06-03
Increase number of rows per query.
Frederick Muriuki Muriithi
2025-06-03
Debug the query: useful to figure out what's happening.
Frederick Muriuki Muriithi
2025-06-03
Memory saving: Don't reload saved data
Frederick Muriuki Muriithi
2025-06-02
Add some debugging statements.
Frederick Muriuki Muriithi
2025-06-02
Parametrize the "DataId" column for different tables.
Frederick Muriuki Muriithi
2025-06-02
Explicitly query for newly entered data.
Frederick Muriuki Muriithi
2025-05-30
Add dataset_id and bundle path to job metadata.
Frederick Muriuki Muriithi
2025-05-30
Fix typo: Fix table name.
Frederick Muriuki Muriithi
2025-05-30
Bug: Loop until the data is exhausted.
Frederick Muriuki Muriithi
2025-05-30
Fix typo, and bug.
Frederick Muriuki Muriithi
2025-05-30
Fix indentation.
Frederick Muriuki Muriithi
2025-05-30
Use full table names rather than aliases
Frederick Muriuki Muriithi
2025-05-19
Provide extra metadata to the job.
Frederick Muriuki Muriithi
2025-05-19
Provide missing URI to the MariaDB database to the script.
Frederick Muriuki Muriithi
2025-05-19
Add function to save the numerical data for phenotypes.
Frederick Muriuki Muriithi
2025-05-12
Use builtin functions to compute log level.
Frederick Muriuki Muriithi
2025-05-05
Init setup and script for async job to load phenotypes into database
Frederick Muriuki Muriithi
2025-05-05
Save/Create new phenotypes in the database.
Frederick Muriuki Muriithi
2025-05-05
Provide endpoint for loading data after QC is successful.
Frederick Muriuki Muriithi
2025-05-05
Include the publication when provided.
Frederick Muriuki Muriithi
2025-04-21
Proceed to jobs status update page.
Frederick Muriuki Muriithi
2025-04-21
Use module-specific logger.
Frederick Muriuki Muriithi
2025-04-21
Add "DataId" to top-level trait details.
Frederick Muriuki Muriithi
2025-04-14
Fix typo.
Frederick Muriuki Muriithi
2025-04-14
Move common fieldnames into exportable variable.
Frederick Muriuki Muriithi
2025-04-14
Implement difference computations.
Frederick Muriuki Muriithi
2025-04-14
Add tests for new difference computation function.
Frederick Muriuki Muriithi
2025-04-14
Log out job command for easier debug.
Frederick Muriuki Muriithi
2025-04-14
Provide species, population and dataset identifiers as job metadata.
Frederick Muriuki Muriithi
2025-03-26
Pass in system log-level to script.
Frederick Muriuki Muriithi
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