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AgeCommit message (Expand)Author
11 daysAdd some phenocovar metadata.Frederick Muriuki Muriithi
11 daysSave phenocovar errors in redis as they are found.Frederick Muriuki Muriithi
11 daysPass the redis connection and fully qualified job idFrederick Muriuki Muriithi
12 daysWrap everything in try-catch to handle errors gracefully.Frederick Muriuki Muriithi
12 daysFix typo.Frederick Muriuki Muriithi
12 daysSend logs to STDOUT too.Frederick Muriuki Muriithi
12 daysReturn 0 on completion of QC processing.Frederick Muriuki Muriithi
12 daysChange from 'pending' to 'started' on entry to script.Frederick Muriuki Muriithi
2024-11-22Use gn-libs code for db connection.Frederick Muriuki Muriithi
2024-10-24Reduce number of local variables created in function.Frederick Muriuki Muriithi
2024-10-24Add `jobid` to extraction directoryFrederick Muriuki Muriithi
2024-10-24Check pheno, phenose, and phenonum files with loggingFrederick Muriuki Muriithi
2024-10-24Check phenocovar files with loggingFrederick Muriuki Muriithi
2024-10-24Fix linting and typing errors.Frederick Muriuki Muriithi
2024-10-24Add a `--loglevel` argument to select loglevel in scriptsFrederick Muriuki Muriithi
2024-10-24Parse entire namespace object rather than individual values.Frederick Muriuki Muriithi
2024-10-24Move logger creation to `build_main` functionFrederick Muriuki Muriithi
2024-10-24Add handler to send log messages to specific Redis listFrederick Muriuki Muriithi
2024-10-22Refactor `qc_pheno_file` and reuse it for different file types.Frederick Muriuki Muriithi
2024-10-22Check for errors in `pheno` files.Frederick Muriuki Muriithi
2024-10-21Check `phenocovar` files for errors.Frederick Muriuki Muriithi
2024-10-17Cleanup: Delete all extracted files after processing.Frederick Muriuki Muriithi
2024-10-17Leave TODO notes for what needs to be done.Frederick Muriuki Muriithi
2024-10-17Fetch samples from databaseFrederick Muriuki Muriithi
2024-10-17Undo transpose for any transposed filesFrederick Muriuki Muriithi
2024-10-17Pass new arguments to QC function.Frederick Muriuki Muriithi
2024-10-17Add `speciesid` and `populationid` arguments to the script.Frederick Muriuki Muriithi
2024-10-17Add the working directory argument to the script.Frederick Muriuki Muriithi
2024-10-17Extract the R/qtl2 bundle for processing.Frederick Muriuki Muriithi
2024-10-17Extract common functions.Frederick Muriuki Muriithi
2024-10-17Save errors for each file in lists. Parallelise error checking.Frederick Muriuki Muriithi
2024-10-17Rewrite the QC code for R/qtl2Frederick Muriuki Muriithi
2024-10-14Initialise background script for running QC on phenotype bundles.Frederick Muriuki Muriithi
2024-10-14BugFix: Use provided prefixFrederick Muriuki Muriithi
2024-10-14Make addition of arguments independent of each other.Frederick Muriuki Muriithi
2024-09-09Enable samples uploads.Frederick Muriuki Muriithi
2024-09-03Initialise the populations package and update references.Frederick Muriuki Muriithi
2024-08-28Move code handling expression data upload into new module.Frederick Muriuki Muriithi
2024-08-16Log out correct parameters.Frederick Muriuki Muriithi
2024-08-13Bug: cross reference with NULL cM when "gmap" file is absentFrederick Muriuki Muriithi
2024-08-12Rename module: Module contains exceptions classes.Frederick Muriuki Muriithi
2024-08-08Fix bugs and pass in logger to functions.Frederick Muriuki Muriithi
2024-08-06Pass logger on to inner functionsFrederick Muriuki Muriithi
2024-07-25Fix typing and linting errors.Frederick Muriuki Muriithi
2024-07-25Rename module: qc_app --> uploaderFrederick Muriuki Muriithi
2024-07-05bug: Return a hashable key, not a dict.Frederick Muriuki Muriithi
2024-07-02Call correct method.Frederick Muriuki Muriithi
2024-07-02Ensure no duplicated values for the query.Frederick Muriuki Muriithi
2024-07-01Check for genotype samples in the databaseFrederick Muriuki Muriithi
2024-06-27Fix bug with the logging setup.Frederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-15 06:43:38 +0000