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gn-uploader: Data uploader for GeneNetwork
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2024-01-11
Cleanup linting and typing errors.
Frederick Muriuki Muriithi
2024-01-11
CLI: Require datasetid as an argument.
Frederick Muriuki Muriithi
2024-01-10
Provide convenience functions to avoid subtle call errors
Frederick Muriuki Muriithi
2024-01-10
Cross-reference genotype data to the dataset.
Frederick Muriuki Muriithi
2024-01-10
Insert genotype data.
Frederick Muriuki Muriithi
2024-01-10
Cross-reference individuals to populations.
Frederick Muriuki Muriithi
2024-01-10
Insert any new individuals/samples into the database.
Frederick Muriuki Muriithi
2024-01-10
Insert any new markers
Frederick Muriuki Muriithi
2024-01-09
WIP: Install genotypes from R/qtl2 bundle
Frederick Muriuki Muriithi
2024-01-09
Fix linting errors
Frederick Muriuki Muriithi
2024-01-09
scripts: Log to redis
Frederick Muriuki Muriithi
2024-01-08
Use extracted functions and fix bugs
Frederick Muriuki Muriithi
2023-12-20
Fix ID column key
Frederick Muriuki Muriithi
2023-12-18
Samples: Hook-up external async script to upload the samples.
Frederick Muriuki Muriithi
2023-12-14
samples: Create external script and fix some bugs.
Frederick Muriuki Muriithi
2023-11-30
Bug: Fix insertion error
Frederick Muriuki Muriithi
2023-11-30
Fix errors caught by pylint and mypy.
Frederick Muriuki Muriithi
2023-11-15
Log out DB errors even when handled
Frederick Muriuki Muriithi
2023-11-15
Remove debugging statement.
Frederick Muriuki Muriithi
2023-11-15
Bug: Insert ProbeSets before average data and cross-refs
Frederick Muriuki Muriithi
2023-11-15
mypy: Fix typing errors.
Frederick Muriuki Muriithi
2023-11-15
Linting: Fix linting errors.
Frederick Muriuki Muriithi
2023-10-30
Prevent overwrite. Avoid inserting same probeset multiple times.
Frederick Muriuki Muriithi
2023-10-18
Link to `ProbeSet.Id` in XRef Table
Frederick Muriuki Muriithi
2023-10-16
Fix bug: Insert ProbeSets if they do not exist.
Frederick Muriuki Muriithi
2023-10-16
Fix bug: Provide the platform_id to `insert_means`
Frederick Muriuki Muriithi
2023-10-16
Fix bug: parsing fields from query.
Frederick Muriuki Muriithi
2022-08-05
Update job status. Display stdout and stderr outputs
Frederick Muriuki Muriithi
2022-08-04
Implement data insertion
Frederick Muriuki Muriithi
2022-08-04
Handle stderr output
Frederick Muriuki Muriithi
2022-08-04
Format queries for output. Get rid of extraneous output.
Frederick Muriuki Muriithi
2022-07-19
Save standard error data. Fix linting and typing errors.
Frederick Muriuki Muriithi
2022-07-19
Implement data insertion (averages/means)
Frederick Muriuki Muriithi
2022-07-19
Check connections before launching
Frederick Muriuki Muriithi
2022-07-19
Add generic worker script
Frederick Muriuki Muriithi
2022-07-19
Rename file validation script
Frederick Muriuki Muriithi
2022-07-07
Replace 'magic' with builtin 'mimetypes'
Frederick Muriuki Muriithi
2022-06-28
Check for inconsistent columns
Frederick Muriuki Muriithi
2022-06-15
Fix linting and type errors
Frederick Muriuki Muriithi
2022-06-10
Enable upload of zipfiles
Frederick Muriuki Muriithi
2022-06-02
Enable user abortion of file parsing
Frederick Muriuki Muriithi
2022-06-02
Add an error display to the progress status report
Frederick Muriuki Muriithi
2022-05-19
Update Web-UI: use new error collection paradigm
Frederick Muriuki Muriithi
2022-05-19
Extract progress indication from the parsing
Frederick Muriuki Muriithi
2022-05-18
Update CLI: use new error collection code
Frederick Muriuki Muriithi
2022-05-11
Tag string as a python f-string to fix error display bug
Frederick Muriuki Muriithi
2022-05-02
Optimise strain names parsing
Frederick Muriuki Muriithi
2022-04-27
Enable managing app via setup.py
Frederick Muriuki Muriithi