| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-07-25 | Rename module: qc_app --> uploader | Frederick Muriuki Muriithi | |
| 2024-07-02 | Add URL information to debug information | Frederick Muriuki Muriithi | |
| To help with error reporting, as the user to also provide the URL of the error page to help with debugging issues that the user encounters. | |||
| 2024-07-01 | Respond with JSON. Handle error messages on UI. | Frederick Muriuki Muriithi | |
| 2024-06-27 | Handle chunks on backend and update UI with progress | Frederick Muriuki Muriithi | |
| Handle the uploaded chunks, enabling resumption of the upload if incomplete. Update the UI with the progress of the upload. | |||
| 2024-06-27 | Upload chunking: Provide UI and code for drag&drop and chunking | Frederick Muriuki Muriithi | |
| * Use resumable.js to handle the drag-and-drop feature, and chunking. * Add styling for the drag-and-drop area, and provide visual indication when a file is successfully dropped and added to the upload list. | |||
| 2024-06-14 | Fix minor UI bugs | Frederick Muriuki Muriithi | |
| 2024-06-14 | Move the modal to top of page to avoid display issues | Frederick Muriuki Muriithi | |
| According to https://getbootstrap.com/docs/3.3/javascript/#callout-modal-markup-placement the bootstrap modal dialogs should be placed at the top of the page to avoid other components affecting their display and/or functionality. | |||
| 2024-06-13 | Update html templates to use bootstrap for styling | Frederick Muriuki Muriithi | |
| 2024-06-12 | Update templates to use bootstrap classes. | Frederick Muriuki Muriithi | |
| 2024-04-12 | Consistently check for possibly non-existent data | Frederick Muriuki Muriithi | |
| The "geno-dataset", "tissue", "pheno-study" and "pheno-dataset" data "objects" might not exist for a particular uploaded bundle, so we check in a consistent manner to ensure they are provided when needed. | |||
| 2024-04-12 | Provide tissue-id details to probeset dataset templates | Frederick Muriuki Muriithi | |
| 2024-04-08 | bug: UI: Provide better error messaging. | Frederick Muriuki Muriithi | |
| 2024-04-08 | bug: Handle IntegrityError: Studies cannot have same name. | Frederick Muriuki Muriithi | |
| 2024-03-29 | Add UI to select/create tissue. | Frederick Muriuki Muriithi | |
| 2024-02-15 | Provide only the file name, not full path. | Frederick Muriuki Muriithi | |
| There are 2 reasons to provide only the filename and not the full path: * Security: We do not want to inadvertently expose the paths to the outside world, or allow users to enter file system paths for this system. * The code does not assume a complete path, rather, it builds the path to the upload directory using the filename received from the user. | |||
| 2024-02-14 | Provide endpoint to send data to. | Frederick Muriuki Muriithi | |
| 2024-02-14 | Extract upload progress indication code | Frederick Muriuki Muriithi | |
| * Extract the UI elements and code for indicating upload progress into separate, reusable "modules". * Fix bugs arising from changes. | |||
| 2024-02-13 | Provide nice UI progress indicators. | Frederick Muriuki Muriithi | |
| 2024-02-12 | Check for errors in the 'phenose' file. | Frederick Muriuki Muriithi | |
| 2024-02-12 | Check for errors in the 'pheno' file. | Frederick Muriuki Muriithi | |
| 2024-02-12 | Improve error display for generic errors | Frederick Muriuki Muriithi | |
| 2024-02-12 | Collect and display errors on 'geno' files in the bundle. | Frederick Muriuki Muriithi | |
| 2024-02-12 | UI: Provide QC successful results page | Frederick Muriuki Muriithi | |
| 2024-02-12 | Retrive and display generic bundle errors | Frederick Muriuki Muriithi | |
| Implement the first QC check for generic errors e.g. missing files in bundle, etc. Display retrieved errors on UI. | |||
| 2024-02-12 | R/qtl2 QC: Set up scaffolding for QC UI | Frederick Muriuki Muriithi | |
| Set up the scaffolding for the flows and UI that will be used when running QC against the uploaded R/qtl2 bundle. This will be fleshed out later, and the UI is likely to change somewhat, down the line. | |||
| 2024-02-07 | Fix error display: setup correct error class | Frederick Muriuki Muriithi | |
| 2024-02-07 | Set up limits for inputs in UI | Frederick Muriuki Muriithi | |
| 2024-02-06 | Bug: Fix routing issues | Frederick Muriuki Muriithi | |
| Fix the routing issues that were redirecting the flow to the wrong endpoints. | |||
| 2024-02-05 | Run QC on the 'geno' file in R/qtl2 bundle. | Frederick Muriuki Muriithi | |
| 2024-02-05 | Do general bundle validation and show errors | Frederick Muriuki Muriithi | |
| * Display any and all errors on the UI * Move `validate_bundle` to QC module and refactor to use `missing_files` | |||
| 2024-01-22 | UI: Fix some UI bugs. | Frederick Muriuki Muriithi | |
| 2024-01-22 | scripts: Pass in logger to get detailed updates. | Frederick Muriuki Muriithi | |
| 2024-01-22 | UI: Show progress of R/qtl2 bundle processing. | Frederick Muriuki Muriithi | |
| 2024-01-18 | UI: Display summary information. | Frederick Muriuki Muriithi | |
| 2024-01-18 | UI: Create new ProbeSet dataset. | Frederick Muriuki Muriithi | |
| 2024-01-18 | UI: Select from existing ProbeSet datasets. | Frederick Muriuki Muriithi | |
| 2024-01-18 | Create new ProbeSet study. | Frederick Muriuki Muriithi | |
| 2024-01-17 | UI: Select ProbeSet study. | Frederick Muriuki Muriithi | |
| 2024-01-17 | UI: Implement creating new genotype datasets. | Frederick Muriuki Muriithi | |
| 2024-01-17 | UI: Initialise summary page. | Frederick Muriuki Muriithi | |
| 2024-01-17 | Enable selecting from existing genotype datasets. | Frederick Muriuki Muriithi | |
| 2024-01-16 | UI: Create UI for creating a new Genotype dataset. | Frederick Muriuki Muriithi | |
| 2024-01-16 | UI: Create UI to select from existing genotype datasets. | Frederick Muriuki Muriithi | |
| 2024-01-16 | Create intermediate step | Frederick Muriuki Muriithi | |
| We do not have the option to modify the request and then redirect with the modification in place. To go around that, this commit creates an intermediate step that informs the user of their progress, while allowing us to store the filename for future steps. | |||
| 2024-01-08 | Upload R/qtl2 zip bundle and check for errors. | Frederick Muriuki Muriithi | |
| 2024-01-08 | Implement "POST" path for "select-population" route. | Frederick Muriuki Muriithi | |
| 2024-01-05 | UI to select the population under which the data falls. | Frederick Muriuki Muriithi | |
| 2024-01-05 | Initialise R/qtl2 bundle upload path | Frederick Muriuki Muriithi | |
| Initialise the upload path for R/qtl2 bundles. This commit adds UI that allows the user to select from existing species, before proceeding to the next stage. | |||
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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