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-rw-r--r--uploader/templates/samples/index.html4
-rw-r--r--uploader/templates/samples/list-samples.html38
-rw-r--r--uploader/templates/samples/select-population.html23
-rw-r--r--uploader/templates/samples/upload-failure.html2
-rw-r--r--uploader/templates/samples/upload-samples.html2
5 files changed, 29 insertions, 40 deletions
diff --git a/uploader/templates/samples/index.html b/uploader/templates/samples/index.html
index ee4a63e..ee98734 100644
--- a/uploader/templates/samples/index.html
+++ b/uploader/templates/samples/index.html
@@ -17,3 +17,7 @@
{{select_species_form(url_for("species.populations.samples.index"), species)}}
</div>
{%endblock%}
+
+{%block javascript%}
+<script type="text/javascript" src="/static/js/species.js"></script>
+{%endblock%}
diff --git a/uploader/templates/samples/list-samples.html b/uploader/templates/samples/list-samples.html
index 13e5cec..aed27c3 100644
--- a/uploader/templates/samples/list-samples.html
+++ b/uploader/templates/samples/list-samples.html
@@ -29,6 +29,19 @@
</p>
</div>
+<div class="row">
+ <p>
+ <a href="{{url_for('species.populations.samples.upload_samples',
+ species_id=species.SpeciesId,
+ population_id=population.Id)}}"
+ title="Add samples for population '{{population.FullName}}' from species
+ '{{species.FullName}}'."
+ class="btn btn-primary">
+ add samples
+ </a>
+ </p>
+</div>
+
{%if samples | length > 0%}
<div class="row">
<p>
@@ -73,7 +86,7 @@
<table class="table">
<thead>
<tr>
- <th>#</th>
+ <th></th>
<th>Name</th>
<th>Auxilliary Name</th>
<th>Symbol</th>
@@ -96,32 +109,17 @@
<p>
<a href="#"
- title="Add samples for population '{{population.FullName}}' from species
+ title="Delete samples from population '{{population.FullName}}' from species
'{{species.FullName}}'."
- class="btn btn-danger">
+ class="btn btn-danger not-implemented">
delete all samples
</a>
</p>
</div>
-
{%else%}
-
<div class="row">
- <p>
- There are no samples entered for this population. Do please go ahead and add
- the samples for this population by clicking on the button below.
- </p>
-
- <p>
- <a href="{{url_for('species.populations.samples.upload_samples',
- species_id=species.SpeciesId,
- population_id=population.Id)}}"
- title="Add samples for population '{{population.FullName}}' from species
- '{{species.FullName}}'."
- class="btn btn-primary">
- add samples
- </a>
- </p>
+ <p>There are no samples entered for this population. Click the "Add Samples"
+ button above, to add some new samples.</p>
</div>
{%endif%}
diff --git a/uploader/templates/samples/select-population.html b/uploader/templates/samples/select-population.html
index f437780..1cc7573 100644
--- a/uploader/templates/samples/select-population.html
+++ b/uploader/templates/samples/select-population.html
@@ -12,28 +12,15 @@
{{flash_all_messages()}}
<div class="row">
- <p>You have selected "{{species.FullName}}" as the species that your data relates to.</p>
- <p>Next, we need information regarding the population your data relates to. Do please select the population from the existing ones below</p>
-</div>
-
-<div class="row">
{{select_population_form(
- url_for("species.populations.samples.select_population", species_id=species.SpeciesId),
- populations)}}
-</div>
-
-<div class="row">
- <p>
- If you cannot find the population your data relates to in the drop-down
- above, you might want to
- <a href="{{url_for('species.populations.create_population',
- species_id=species.SpeciesId)}}"
- title="Create a new population for species '{{species.FullName}},">
- add a new population to GeneNetwork</a>
- instead.
+ url_for("species.populations.samples.select_population", species_id=species.SpeciesId), species, populations)}}
</div>
{%endblock%}
{%block sidebarcontents%}
{{display_species_card(species)}}
{%endblock%}
+
+{%block javascript%}
+<script type="text/javascript" src="/static/js/populations.js"></script>
+{%endblock%}
diff --git a/uploader/templates/samples/upload-failure.html b/uploader/templates/samples/upload-failure.html
index 458ab55..2cf8053 100644
--- a/uploader/templates/samples/upload-failure.html
+++ b/uploader/templates/samples/upload-failure.html
@@ -15,7 +15,7 @@
<h3>Debugging Information</h3>
<ul>
- <li><strong>job id</strong>: {{job.job_id}}</li>
+ <li><strong>job id</strong>: {{job.jobid}}</li>
<li><strong>status</strong>: {{job.status}}</li>
<li><strong>job type</strong>: {{job["job-type"]}}</li>
</ul>
diff --git a/uploader/templates/samples/upload-samples.html b/uploader/templates/samples/upload-samples.html
index 25d3290..6422094 100644
--- a/uploader/templates/samples/upload-samples.html
+++ b/uploader/templates/samples/upload-samples.html
@@ -66,7 +66,7 @@
<div class="form-group">
<label for="file-samples" class="form-label">select file</label>
<input type="file" name="samples_file" id="file:samples"
- accept="text/csv, text/tab-separated-values"
+ accept="text/csv, text/tab-separated-values, text/plain"
class="form-control" />
</div>