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Diffstat (limited to 'uploader/templates/samples/upload-samples.html')
| -rw-r--r-- | uploader/templates/samples/upload-samples.html | 139 |
1 files changed, 139 insertions, 0 deletions
diff --git a/uploader/templates/samples/upload-samples.html b/uploader/templates/samples/upload-samples.html new file mode 100644 index 0000000..e62de57 --- /dev/null +++ b/uploader/templates/samples/upload-samples.html @@ -0,0 +1,139 @@ +{%extends "base.html"%} +{%from "flash_messages.html" import flash_messages%} + +{%block title%}Upload Samples{%endblock%} + +{%block css%}{%endblock%} + +{%block contents%} +<h1 class="heading">upload samples</h1> + +{{flash_messages("alert-success")}} + +<p>You can now upload a character-separated value (CSV) file that contains + details about your samples. The CSV file should have the following fields: + <dl> + <dt>Name</dt> + <dd>The primary name for the sample</dd> + + <dt>Name2</dt> + <dd>A secondary name for the sample. This can simply be the same as + <strong>Name</strong> above. This field <strong>MUST</strong> contain a + value.</dd> + + <dt>Symbol</dt> + <dd>A symbol for the sample. Can be an empty field.</dd> + + <dt>Alias</dt> + <dd>An alias for the sample. Can be an empty field.</dd> + </dl> +</p> + +<form id="form-samples" + method="POST" + action="{{url_for('samples.upload_samples', + species_id=species.SpeciesId, + population_id=population.InbredSetId)}}" + enctype="multipart/form-data"> + <legend class="heading">upload samples</legend> + + <div class="form-group"> + <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> + <label class="form-label">species:</label> + <span class="form-text">{{species.SpeciesName}} [{{species.MenuName}}]</span> + </div> + + <div class="form-group"> + <input type="hidden" name="inbredset_id" value="{{population.InbredSetId}}" /> + <label class="form-label">grouping/population:</label> + <span class="form-text">{{population.Name}} [{{population.FullName}}]</span> + </div> + + <div class="form-group"> + <label for="file-samples" class="form-label">select file</label> + <input type="file" name="samples_file" id="file:samples" + accept="text/csv, text/tab-separated-values" + class="form-control" /> + </div> + + <div class="form-group"> + <label for="select:separator" class="form-label">field separator</label> + <select id="select:separator" + name="separator" + required="required" + class="form-control"> + <option value="">Select separator for your file: (default is comma)</option> + <option value="	">TAB</option> + <option value=" ">Space</option> + <option value=",">Comma</option> + <option value=";">Semicolon</option> + <option value="other">Other</option> + </select> + <input id="txt:separator" + type="text" + name="other_separator" + class="form-control" /> + <small class="form-text text-muted"> + If you select '<strong>Other</strong>' for the field separator value, + enter the character that separates the fields in your CSV file in the form + field below. + </small> + </div> + + <div class="form-group form-check"> + <input id="chk:heading" + type="checkbox" + name="first_line_heading" + class="form-check-input" /> + <label for="chk:heading" class="form-check-label"> + first line is a heading?</label> + <small class="form-text text-muted"> + Select this if the first line in your file contains headings for the + columns. + </small> + </div> + + <div class="form-group"> + <label for="txt:delimiter" class="form-label">field delimiter</label> + <input id="txt:delimiter" + type="text" + name="field_delimiter" + maxlength="1" + class="form-control" /> + <small class="form-text text-muted"> + If there is a character delimiting the string texts within particular + fields in your CSV, provide the character here. This can be left blank if + no such delimiters exist in your file. + </small> + </div> + + <button type="submit" + class="btn btn-primary">upload samples file</button> +</form> + +<table id="tbl:samples-preview" class="table"> + <caption class="heading">preview content</caption> + + <thead> + <tr> + <th>Name</th> + <th>Name2</th> + <th>Symbol</th> + <th>Alias</th> + </tr> + </thead> + + <tbody> + <tr id="default-row"> + <td colspan="4"> + Please make some selections to preview the data.</td> + </tr> + </tbody> +</table> + +{%endblock%} + + +{%block javascript%} +<script src="/static/js/upload_samples.js" type="text/javascript"></script> +{%endblock%} |