diff options
Diffstat (limited to 'uploader/templates/base.html')
| -rw-r--r-- | uploader/templates/base.html | 187 |
1 files changed, 89 insertions, 98 deletions
diff --git a/uploader/templates/base.html b/uploader/templates/base.html index 019aa39..dd097de 100644 --- a/uploader/templates/base.html +++ b/uploader/templates/base.html @@ -8,125 +8,116 @@ <meta name="viewport" content="width=device-width, initial-scale=1.0" /> {%block extrameta%}{%endblock%} - <title>GN Uploader: {%block title%}{%endblock%}</title> + <title>Data Upload and Quality Control: {%block title%}{%endblock%}</title> <link rel="stylesheet" type="text/css" href="{{url_for('base.bootstrap', filename='css/bootstrap.min.css')}}" /> <link rel="stylesheet" type="text/css" - href="{{url_for('base.bootstrap', - filename='css/bootstrap-theme.min.css')}}" /> - <link rel="stylesheet" type="text/css" href="/static/css/styles.css" /> + href="{{url_for('base.datatables', + filename='css/dataTables.bootstrap5.min.css')}}" /> + <link rel="stylesheet" type="text/css" href="/static/css/layout-common.css" /> + <link rel="stylesheet" type="text/css" href="/static/css/layout-large.css" /> + <link rel="stylesheet" type="text/css" href="/static/css/layout-medium.css" /> + <link rel="stylesheet" type="text/css" href="/static/css/layout-small.css" /> + <link rel="stylesheet" type="text/css" href="/static/css/theme.css" /> {%block css%}{%endblock%} </head> <body> - <header id="header" class="container-fluid"> - <div class="row"> - <span class="header col-lg-9">GeneNetwork Data Quality Control and Upload</span> - <nav class="header-nav col-lg-3"> - <ul class="nav justify-content-end"> - <li> - {%if user_logged_in()%} - <a href="{{url_for('oauth2.logout')}}" - title="Log out of the system">{{user_email()}} — Log Out</a> - {%else%} - <a href="{{authserver_authorise_uri()}}" - title="Log in to the system">Log In</a> - {%endif%} - </li> - </ul> - </nav> + <header id="header"> + <span id="header-text">GeneNetwork</span> + <nav id="header-nav"> + <ul class="nav"> + {%if user_logged_in()%} + {%if view_under_construction%} + <li> + <a href="{{url_for('background-jobs.list_jobs')}}" + title="User's background jobs."> + <!-- https://icons.getbootstrap.com/icons/back/ --> + <svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" fill="currentColor" class="bi bi-back" viewBox="0 0 16 16"> + <path d="M0 2a2 2 0 0 1 2-2h8a2 2 0 0 1 2 2v2h2a2 2 0 0 1 2 2v8a2 2 0 0 1-2 2H6a2 2 0 0 1-2-2v-2H2a2 2 0 0 1-2-2zm2-1a1 1 0 0 0-1 1v8a1 1 0 0 0 1 1h8a1 1 0 0 0 1-1V2a1 1 0 0 0-1-1z"/> + </svg> + Background jobs + </a> + </li> + {%endif%} + + <li> + <a href="{{url_for('oauth2.logout')}}" + title="Log out of the system"> + <!-- https://icons.getbootstrap.com/icons/file-person/ --> + <svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" fill="currentColor" class="bi bi-file-person" viewBox="0 0 16 16"> + <path d="M12 1a1 1 0 0 1 1 1v10.755S12 11 8 11s-5 1.755-5 1.755V2a1 1 0 0 1 1-1zM4 0a2 2 0 0 0-2 2v12a2 2 0 0 0 2 2h8a2 2 0 0 0 2-2V2a2 2 0 0 0-2-2z"/> + <path d="M8 10a3 3 0 1 0 0-6 3 3 0 0 0 0 6"/> + </svg> + <span class="glyphicon glyphicon-user"></span> + Sign Out ({{user_email()}})</a> + </li> + {%else%} + <li> + <a href="{{authserver_authorise_uri()}}" + title="Log in to the system">Sign In</a> + {%endif%} + </li> + </ul> + </nav> </header> - <aside id="nav-sidebar" class="container-fluid"> - <ul class="nav flex-column"> - <li {%if activemenu=="home"%}class="activemenu"{%endif%}> - <a href="/" >Home</a></li> - <li {%if activemenu=="species"%}class="activemenu"{%endif%}> - <a href="{{url_for('species.list_species')}}" - title="View and manage species information.">Species</a></li> - <li {%if activemenu=="platforms"%}class="activemenu"{%endif%}> - <a href="{{url_for('species.platforms.index')}}" - title="View and manage species platforms.">Sequencing Platforms</a></li> - <li {%if activemenu=="populations"%}class="activemenu"{%endif%}> - <a href="{{url_for('species.populations.index')}}" - title="View and manage species populations.">Populations</a></li> - <li {%if activemenu=="samples"%}class="activemenu"{%endif%}> - <a href="{{url_for('species.populations.samples.index')}}" - title="Upload population samples.">Samples</a></li> - <li {%if activemenu=="genotypes"%}class="activemenu"{%endif%}> - <a href="{{url_for('species.populations.genotypes.index')}}" - title="Upload Genotype data.">Genotype Data</a></li> - <!-- - TODO: Maybe include menus here for managing studies and dataset or - maybe have the studies/datasets managed under their respective - sections, e.g. "Publish*" studies/datasets under the "Phenotypes" - section, "ProbeSet*" studies/datasets under the "Expression Data" - sections, etc. - --> - <li {%if activemenu=="phenotypes"%}class="activemenu"{%endif%}> - <a href="{{url_for('species.populations.phenotypes.index')}}" - title="Upload phenotype data.">Phenotype Data</a></li> - <li {%if activemenu=="expression-data"%}class="activemenu"{%endif%}> - <a href="{{url_for('species.populations.expression-data.index')}}" - title="Upload expression data.">Expression Data</a></li> - <li {%if activemenu=="individuals"%}class="activemenu"{%endif%}> - <a href="#" - class="not-implemented" - title="Upload individual data.">Individual Data</a></li> - <li {%if activemenu=="rna-seq"%}class="activemenu"{%endif%}> - <a href="#" - class="not-implemented" - title="Upload RNA-Seq data.">RNA-Seq Data</a></li> - <li {%if activemenu=="async-jobs"%}class="activemenu"{%endif%}> - <a href="#" - class="not-implemented" - title="View and manage the backgroud jobs you have running"> - Background Jobs</a></li> - </ul> - </aside> - - <main id="main" class="main container-fluid"> - - <div class="pagetitle row"> - <h1>GN Uploader: {%block pagetitle%}{%endblock%}</h1> - <nav> - <ol class="breadcrumb"> - <li {%if activelink is not defined or activelink=="home"%} - class="breadcrumb-item active" - {%else%} - class="breadcrumb-item" - {%endif%}> - <a href="{{url_for('base.index')}}">Home</a> - </li> - {%block lvl1_breadcrumbs%}{%endblock%} - </ol> - </nav> - </div> - - <div class="row"> - <div class="container-fluid"> - <div class="col-md-8 main-content"> - {%block contents%}{%endblock%} - </div> - <div class="sidebar-content col-md-4"> - {%block sidebarcontents%}{%endblock%} - </div> + + <main id="main" class="main"> + <nav id="breadcrumbs" aria-label="breadcrumb"> + <ol class="breadcrumb"> + {%block breadcrumbs%} + <li class="breadcrumb-item"> + <a href="{{url_for('base.index')}}">Home</a></li> + {%endblock%} + </ol> + </nav> + + <div id="main-content"> + {%block contents%}{%endblock%} + </div> + + <div id="sidebar-content"> + {%block sidebarcontents%}{%endblock%} </div> - </div> </main> + + <script type="text/javascript" src="/static/js/debug.js"></script> + <!-- + Core dependencies + --> <script src="{{url_for('base.jquery', filename='jquery.min.js')}}"></script> <script src="{{url_for('base.bootstrap', filename='js/bootstrap.min.js')}}"></script> - <script type="text/javascript" src="/static/js/misc.js"></script> - {%block javascript%}{%endblock%} - </body> + <!-- + DataTables dependencies + --> + <script type="text/javascript" + src="{{url_for('base.datatables', + filename='js/dataTables.min.js')}}"></script> + <script type="text/javascript" + src="{{url_for('base.datatables_extensions', + filename='scroller/js/dataTables.scroller.min.js')}}"></script> + <script type="text/javascript" + src="{{url_for('base.datatables_extensions', + filename='buttons/js/dataTables.buttons.min.js')}}"></script> + <script type="text/javascript" + src="{{url_for('base.datatables_extensions', + filename='select/js/dataTables.select.min.js')}}"></script> + <!-- + local dependencies + --> + <script type="text/javascript" src="/static/js/utils.js"></script> + <script type="text/javascript" src="/static/js/datatables.js"></script> + {%block javascript%}{%endblock%} + </body> </html> |