diff options
Diffstat (limited to 'uploader/phenotypes')
| -rw-r--r-- | uploader/phenotypes/models.py | 3 | ||||
| -rw-r--r-- | uploader/phenotypes/views.py | 7 |
2 files changed, 2 insertions, 8 deletions
diff --git a/uploader/phenotypes/models.py b/uploader/phenotypes/models.py index ed14993..4a1b2d5 100644 --- a/uploader/phenotypes/models.py +++ b/uploader/phenotypes/models.py @@ -9,9 +9,10 @@ from typing import Optional, Iterable import MySQLdb as mdb from MySQLdb.cursors import Cursor, DictCursor -from functional_tools import take from gn_libs.mysqldb import debug_query +from functional_tools import take + logger = logging.getLogger(__name__) diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py index 4a9df8b..04cdc3b 100644 --- a/uploader/phenotypes/views.py +++ b/uploader/phenotypes/views.py @@ -1,15 +1,12 @@ """Views handling ('classical') phenotypes.""" import sys -import csv import uuid import json import logging -import tempfile from typing import Any from pathlib import Path from zipfile import ZipFile from functools import wraps, reduce -from logging import INFO, ERROR, DEBUG, FATAL, CRITICAL, WARNING from urllib.parse import urljoin, urlparse, ParseResult, urlunparse, urlencode import datetime @@ -18,7 +15,6 @@ from redis import Redis from pymonad.either import Left from requests.models import Response from MySQLdb.cursors import DictCursor -from werkzeug.utils import secure_filename from gn_libs import sqlite3 from gn_libs import jobs as gnlibs_jobs @@ -31,7 +27,6 @@ from flask import (flash, jsonify, redirect, Blueprint, - send_file, current_app as app) # from r_qtl import r_qtl2 as rqtl2 @@ -53,7 +48,6 @@ from uploader.species.models import all_species, species_by_id from uploader.monadic_requests import make_either_error_handler from uploader.publications.models import fetch_publication_by_id from uploader.request_checks import with_species, with_population -from uploader.samples.models import samples_by_species_and_population from uploader.input_validation import (encode_errors, decode_errors, is_valid_representative_name) @@ -64,7 +58,6 @@ from .models import (dataset_by_id, save_new_dataset, dataset_phenotypes, datasets_by_population, - phenotypes_data_by_ids, phenotype_publication_data) phenotypesbp = Blueprint("phenotypes", __name__) |