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-{%extends "base.html"%}
-{%from "flash_messages.html" import flash_messages%}
-
-{%block title%}Upload Samples{%endblock%}
-
-{%block css%}{%endblock%}
-
-{%block contents%}
-<h1 class="heading">upload samples</h1>
-
-{{flash_messages("alert-success")}}
-
-<p>You can now upload a character-separated value (CSV) file that contains
- details about your samples. The CSV file should have the following fields:
- <dl>
- <dt>Name</dt>
- <dd>The primary name for the sample</dd>
-
- <dt>Name2</dt>
- <dd>A secondary name for the sample. This can simply be the same as
- <strong>Name</strong> above. This field <strong>MUST</strong> contain a
- value.</dd>
-
- <dt>Symbol</dt>
- <dd>A symbol for the sample. Can be an empty field.</dd>
-
- <dt>Alias</dt>
- <dd>An alias for the sample. Can be an empty field.</dd>
- </dl>
-</p>
-
-<form id="form-samples"
- method="POST"
- action="{{url_for('samples.upload_samples',
- species_id=species.SpeciesId,
- population_id=population.InbredSetId)}}"
- enctype="multipart/form-data">
- <legend class="heading">upload samples</legend>
-
- <div class="form-group">
- <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
- <label class="form-label">species:</label>
- <span class="form-text">{{species.SpeciesName}} [{{species.MenuName}}]</span>
- </div>
-
- <div class="form-group">
- <input type="hidden" name="inbredset_id" value="{{population.InbredSetId}}" />
- <label class="form-label">grouping/population:</label>
- <span class="form-text">{{population.Name}} [{{population.FullName}}]</span>
- </div>
-
- <div class="form-group">
- <label for="file-samples" class="form-label">select file</label>
- <input type="file" name="samples_file" id="file:samples"
- accept="text/csv, text/tab-separated-values"
- class="form-control" />
- </div>
-
- <div class="form-group">
- <label for="select:separator" class="form-label">field separator</label>
- <select id="select:separator"
- name="separator"
- required="required"
- class="form-control">
- <option value="">Select separator for your file: (default is comma)</option>
- <option value="&#x0009;">TAB</option>
- <option value="&#x0020;">Space</option>
- <option value=",">Comma</option>
- <option value=";">Semicolon</option>
- <option value="other">Other</option>
- </select>
- <input id="txt:separator"
- type="text"
- name="other_separator"
- class="form-control" />
- <small class="form-text text-muted">
- If you select '<strong>Other</strong>' for the field separator value,
- enter the character that separates the fields in your CSV file in the form
- field below.
- </small>
- </div>
-
- <div class="form-group form-check">
- <input id="chk:heading"
- type="checkbox"
- name="first_line_heading"
- class="form-check-input" />
- <label for="chk:heading" class="form-check-label">
- first line is a heading?</label>
- <small class="form-text text-muted">
- Select this if the first line in your file contains headings for the
- columns.
- </small>
- </div>
-
- <div class="form-group">
- <label for="txt:delimiter" class="form-label">field delimiter</label>
- <input id="txt:delimiter"
- type="text"
- name="field_delimiter"
- maxlength="1"
- class="form-control" />
- <small class="form-text text-muted">
- If there is a character delimiting the string texts within particular
- fields in your CSV, provide the character here. This can be left blank if
- no such delimiters exist in your file.
- </small>
- </div>
-
- <button type="submit"
- class="btn btn-primary">upload samples file</button>
-</form>
-
-<table id="tbl:samples-preview" class="table">
- <caption class="heading">preview content</caption>
-
- <thead>
- <tr>
- <th>Name</th>
- <th>Name2</th>
- <th>Symbol</th>
- <th>Alias</th>
- </tr>
- </thead>
-
- <tbody>
- <tr id="default-row">
- <td colspan="4">
- Please make some selections to preview the data.</td>
- </tr>
- </tbody>
-</table>
-
-{%endblock%}
-
-
-{%block javascript%}
-<script src="/static/js/upload_samples.js" type="text/javascript"></script>
-{%endblock%}