diff options
| -rw-r--r-- | scripts/load_phenotypes_to_db.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py index 9d8b82f..a49d80b 100644 --- a/scripts/load_phenotypes_to_db.py +++ b/scripts/load_phenotypes_to_db.py @@ -2,17 +2,19 @@ import uuid import json import logging import argparse -from typing import Union from pathlib import Path +from typing import Any, Union from MySQLdb.cursors import Cursor, DictCursor from gn_libs import jobs, mysqldb, sqlite3 from r_qtl import r_qtl2 as rqtl2 -from uploader.phenotypes.modes import save_phenotypes_data -from uploader.publications.models import create_new_publications +from uploader.phenotypes.models import save_phenotypes_data from uploader.samples.models import samples_by_species_and_population +from uploader.publications.models import ( + create_new_publications, + fetch_publication_by_id) from scripts.rqtl2.bundleutils import build_line_joiner, build_line_splitter |