Rename module: qc_app --> uploader

1 files changed, 161 insertions, 0 deletions

diff --git a/uploader/templates/select_dataset.html b/uploader/templates/select_dataset.html
new file mode 100644
index 0000000..2f07de8
--- /dev/null
+++ b/uploader/templates/select_dataset.html
@@ -0,0 +1,161 @@
+{%extends "base.html"%}
+{%from "dbupdate_hidden_fields.html" import hidden_fields%}
+
+{%block title%}Select Dataset{%endblock%}
+
+{%block css%}
+<link rel="stylesheet" href="/static/css/two-column-with-separator.css" />
+{%endblock%}
+
+{%block contents%}
+<h2 class="heading">{{filename}}: select dataset</h2>
+
+<div class="row">
+  <form method="POST" action="{{url_for('dbinsert.final_confirmation')}}"
+	id="select-dataset-form" class="two-col-sep-col1">
+    <legend class="heading">choose existing dataset</legend>
+    {{hidden_fields(
+    filename, filetype, species=species, genechipid=genechipid,
+    studyid=studyid, totallines=totallines)}}
+
+    <div class="form-group">
+      <label for="datasetid" class="form-label">dataset:</label>
+      <select id="datasetid" name="datasetid" class="form-control"
+	      {%if datasets | length == 0:%}
+	      disabled="disabled"
+	      {%endif%}>
+	{%for dataset in datasets:%}
+	<option value="{{dataset['Id']}}">
+	  [{{dataset["Name"]}}] - {{dataset["FullName"]}}
+	</option>
+	{%endfor%}
+      </select>
+    </div>
+
+    <button type="submit" class="btn btn-primary"
+	    {%if datasets | length == 0:%}
+	    disabled="disabled"
+	    {%endif%} />update database</button>
+</form>
+</div>
+
+<div class="row">
+  <p class="two-col-sep-separator">OR</p>
+</div>
+
+<div class="row">
+  <form method="POST" id="create-dataset-form"
+	action="{{url_for('dbinsert.create_dataset')}}"
+	class="two-col-sep-col2">
+    <legend class="heading">create new dataset</legend>
+    {{hidden_fields(
+    filename, filetype, species=species, genechipid=genechipid,
+    studyid=studyid, totallines=totallines)}}
+
+    {%with messages = get_flashed_messages(with_categories=true)%}
+    {%if messages:%}
+    <ul>
+      {%for category, message in messages:%}
+      <li class="{{category}}">{{message}}</li>
+      {%endfor%}
+    </ul>
+    {%endif%}
+    {%endwith%}
+
+    <div class="form-group">
+      <label for="avgid" class="form-label">average:</label>
+      <select id="avgid" name="avgid" required="required" class="form-control">
+	<option value="">Select averaging method</option>
+	{%for method in avgmethods:%}
+	<option value="{{method['AvgMethodId']}}"
+		{%if avgid is defined and method['AvgMethodId'] | int == avgid | int%}
+		selected="selected"
+		{%endif%}>
+	  {{method["Name"]}}
+	</option>
+	{%endfor%}
+      </select>
+    </div>
+
+    <div class="form-group">
+      <label for="datasetname" class="form-label">name:</label>
+      <input id="datasetname" name="datasetname" type="text"
+	     class="form-control"
+	     {%if datasetname is defined %}
+	     value="{{datasetname}}"
+	     {%endif%} />
+    </div>
+
+    <div class="form-group">
+      <label for="datasetname2" class="form-label">name 2:</label>
+      <input id="datasetname2" name="datasetname2" type="text"
+	     required="required" class="form-control"
+	     {%if datasetname2 is defined %}
+	     value="{{datasetname2}}"
+	     {%endif%} />
+    </div>
+
+    <div class="form-group">
+      <label for="datasetfullname" class="form-label">full name:</label>
+      <input id="datasetfullname" name="datasetfullname" type="text"
+	     required="required" class="form-control"
+	     {%if datasetfullname is defined %}
+	     value="{{datasetfullname}}"
+	     {%endif%} />
+    </div>
+
+    <div class="form-group">
+      <label for="datasetshortname" class="form-label">short name:</label>
+      <input id="datasetshortname" name="datasetshortname" type="text"
+	     required="required" class="form-control"
+	     {%if datasetshortname is defined %}
+	     value="{{datasetshortname}}"
+	     {%endif%} />
+    </div>
+
+    <div class="form-group">
+      <label for="datasetpublic" class="form-label">public:</label>
+      <input id="datasetpublic" name="datasetpublic" type="number"
+	     required="required" min="0" max="2"
+	     {%if datasetpublic is defined %}
+	     value="{{datasetpublic | int}}"
+	     {%else%}
+	     value="0"
+	     {%endif%}
+	     class="form-control" />
+    </div>
+
+    <div class="form-group">
+      <label for="datasetconfidentiality">confidentiality:</label>
+      <input id="datasetconfidentiality" name="datasetconfidentiality"
+	     type="number" required="required" min="0" max="2"
+	     {%if datasetconfidentiality is defined %}
+	     value="{{datasetconfidentiality | int}}"
+	     {%else%}
+	     value="0"
+	     {%endif%}
+	     class="form-control" />
+    </div>
+
+    <div class="form-group">
+      <label for="datasetdatascale" class="form-label">data scale:</label>
+      <select id="datasetdatascale" name="datasetdatascale" class="form-control">
+	<option value="">None</option>
+	{%for dscale in datascales:%}
+	<option value="{{dscale}}"
+		{%if datasetdatascale is defined and dscale == datasetdatascale%}
+		selected="selected"
+		{%elif dscale == "log2":%}
+		selected="selected"
+		{%endif%}>
+	  {{dscale}}
+	</option>
+	{%endfor%}
+      </select>
+    </div>
+
+    <button type="submit" class="btn btn-primary">create new dataset</button>
+  </form>
+</div>
+
+{%endblock%}