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authorFrederick Muriuki Muriithi2024-07-25 11:07:33 -0500
committerFrederick Muriuki Muriithi2024-07-25 14:34:09 -0500
commit754e8f214b940e05298cb360ed829f5c685d55a5 (patch)
tree62c2c5b601746621f0949b38937ad232f006dee2 /uploader/templates/samples/upload-samples.html
parentde9e1b9fe37928b864bea28b408de6c14d04526b (diff)
downloadgn-uploader-754e8f214b940e05298cb360ed829f5c685d55a5.tar.gz
Rename module: qc_app --> uploader
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+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload Samples{%endblock%}
+
+{%block css%}{%endblock%}
+
+{%block contents%}
+<h1 class="heading">upload samples</h1>
+
+{{flash_messages("alert-success")}}
+
+<p>You can now upload a character-separated value (CSV) file that contains
+ details about your samples. The CSV file should have the following fields:
+ <dl>
+ <dt>Name</dt>
+ <dd>The primary name for the sample</dd>
+
+ <dt>Name2</dt>
+ <dd>A secondary name for the sample. This can simply be the same as
+ <strong>Name</strong> above. This field <strong>MUST</strong> contain a
+ value.</dd>
+
+ <dt>Symbol</dt>
+ <dd>A symbol for the sample. Can be an empty field.</dd>
+
+ <dt>Alias</dt>
+ <dd>An alias for the sample. Can be an empty field.</dd>
+ </dl>
+</p>
+
+<form id="form-samples"
+ method="POST"
+ action="{{url_for('samples.upload_samples',
+ species_id=species.SpeciesId,
+ population_id=population.InbredSetId)}}"
+ enctype="multipart/form-data">
+ <legend class="heading">upload samples</legend>
+
+ <div class="form-group">
+ <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+ <label class="form-label">species:</label>
+ <span class="form-text">{{species.SpeciesName}} [{{species.MenuName}}]</span>
+ </div>
+
+ <div class="form-group">
+ <input type="hidden" name="inbredset_id" value="{{population.InbredSetId}}" />
+ <label class="form-label">grouping/population:</label>
+ <span class="form-text">{{population.Name}} [{{population.FullName}}]</span>
+ </div>
+
+ <div class="form-group">
+ <label for="file-samples" class="form-label">select file</label>
+ <input type="file" name="samples_file" id="file:samples"
+ accept="text/csv, text/tab-separated-values"
+ class="form-control" />
+ </div>
+
+ <div class="form-group">
+ <label for="select:separator" class="form-label">field separator</label>
+ <select id="select:separator"
+ name="separator"
+ required="required"
+ class="form-control">
+ <option value="">Select separator for your file: (default is comma)</option>
+ <option value="&#x0009;">TAB</option>
+ <option value="&#x0020;">Space</option>
+ <option value=",">Comma</option>
+ <option value=";">Semicolon</option>
+ <option value="other">Other</option>
+ </select>
+ <input id="txt:separator"
+ type="text"
+ name="other_separator"
+ class="form-control" />
+ <small class="form-text text-muted">
+ If you select '<strong>Other</strong>' for the field separator value,
+ enter the character that separates the fields in your CSV file in the form
+ field below.
+ </small>
+ </div>
+
+ <div class="form-group form-check">
+ <input id="chk:heading"
+ type="checkbox"
+ name="first_line_heading"
+ class="form-check-input" />
+ <label for="chk:heading" class="form-check-label">
+ first line is a heading?</label>
+ <small class="form-text text-muted">
+ Select this if the first line in your file contains headings for the
+ columns.
+ </small>
+ </div>
+
+ <div class="form-group">
+ <label for="txt:delimiter" class="form-label">field delimiter</label>
+ <input id="txt:delimiter"
+ type="text"
+ name="field_delimiter"
+ maxlength="1"
+ class="form-control" />
+ <small class="form-text text-muted">
+ If there is a character delimiting the string texts within particular
+ fields in your CSV, provide the character here. This can be left blank if
+ no such delimiters exist in your file.
+ </small>
+ </div>
+
+ <button type="submit"
+ class="btn btn-primary">upload samples file</button>
+</form>
+
+<table id="tbl:samples-preview" class="table">
+ <caption class="heading">preview content</caption>
+
+ <thead>
+ <tr>
+ <th>Name</th>
+ <th>Name2</th>
+ <th>Symbol</th>
+ <th>Alias</th>
+ </tr>
+ </thead>
+
+ <tbody>
+ <tr id="default-row">
+ <td colspan="4">
+ Please make some selections to preview the data.</td>
+ </tr>
+ </tbody>
+</table>
+
+{%endblock%}
+
+
+{%block javascript%}
+<script src="/static/js/upload_samples.js" type="text/javascript"></script>
+{%endblock%}