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| author | Frederick Muriuki Muriithi | 2024-02-20 06:12:36 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-02-20 06:12:36 +0300 |
| commit | 2f4d2c691f2a40e506d7fc274a0fcd717a028f3d (patch) | |
| tree | 723a524a2416d432efc3070ac1ba4b0f4301d7d3 /tests/r_qtl | |
| parent | b1483d974d30d162e12557f55e856ec7d79bad2e (diff) | |
| download | gn-uploader-2f4d2c691f2a40e506d7fc274a0fcd717a028f3d.tar.gz | |
Read samples from geno file.
Diffstat (limited to 'tests/r_qtl')
| -rw-r--r-- | tests/r_qtl/test_r_qtl2_geno.py | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/tests/r_qtl/test_r_qtl2_geno.py b/tests/r_qtl/test_r_qtl2_geno.py index c33984e..d3c77e6 100644 --- a/tests/r_qtl/test_r_qtl2_geno.py +++ b/tests/r_qtl/test_r_qtl2_geno.py @@ -269,3 +269,16 @@ def test_parse_founder_geno_files(relpath, expected): "founder_geno", cdata, *rqtl2.make_process_data_geno(cdata))) == expected + + +@pytest.mark.unit_test +@pytest.mark.parametrize( + "filepath,expected", + (("tests/r_qtl/test_files/test_geno.zip", + ("1", "2", "3", "4", "5", "6", "7", "8", "9", "10")), + ("tests/r_qtl/test_files/test_geno_transposed.zip", + ("1", "2", "3", "4", "5", "6", "7", "8", "9", "10")), + ("tests/r_qtl/test_files/test_geno_multiple.zip", + ("1", "2", "3", "4", "5", "6", "7", "8", "9", "10")))) +def test_load_geno_samples(filepath, expected): + assert sorted(rqtl2.load_geno_samples(filepath)) == sorted(expected) |