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authorFrederick Muriuki Muriithi2024-02-20 05:16:45 +0300
committerFrederick Muriuki Muriithi2024-02-20 05:16:45 +0300
commitb1483d974d30d162e12557f55e856ec7d79bad2e (patch)
tree0711530c5f06e2485edf4e768187e3df79faad55 /tests/qc/test_checks.py
parent8e692b0c372db3999dfc3989f361676c579fb9cd (diff)
downloadgn-uploader-b1483d974d30d162e12557f55e856ec7d79bad2e.tar.gz
Read each file separately
Provide the function 'read_file_data' in the 'r_qtl.r_qtl2' module to read each file in the bundle separately. The function 'file_data' in the 'r_qtl.r_qtl2' module reads *ALL* the files of a particular type (e.g. geno files) and returns a single generator object with the data from *ALL* the files. This does not render itself very useful for error checking. We needed a way to check for errors, and report them for each and every file in the bundle, for easier tracking and fixing.
Diffstat (limited to 'tests/qc/test_checks.py')
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