diff options
| author | Frederick Muriuki Muriithi | 2024-08-09 14:20:17 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-08-12 09:47:19 -0500 |
| commit | 321cb85283dc0a182e86d0ee509cae9ced4e39cd (patch) | |
| tree | a05a9cbd98f14d9a27139f99ea4b7f6b0daefcee /scripts | |
| parent | d29a205d83a3eeba49483cc2f3fd372e461b5a9c (diff) | |
| download | gn-uploader-321cb85283dc0a182e86d0ee509cae9ced4e39cd.tar.gz | |
Rename module: Module contains exceptions classes.
Diffstat (limited to 'scripts')
| -rw-r--r-- | scripts/process_rqtl2_bundle.py | 2 | ||||
| -rw-r--r-- | scripts/qc_on_rqtl2_bundle.py | 4 |
2 files changed, 3 insertions, 3 deletions
diff --git a/scripts/process_rqtl2_bundle.py b/scripts/process_rqtl2_bundle.py index a7e169d..20cfd3b 100644 --- a/scripts/process_rqtl2_bundle.py +++ b/scripts/process_rqtl2_bundle.py @@ -13,9 +13,9 @@ from redis import Redis from functional_tools import take -import r_qtl.errors as rqe import r_qtl.r_qtl2 as rqtl2 import r_qtl.r_qtl2_qc as rqc +import r_qtl.exceptions as rqe from uploader import jobs from uploader.db_utils import database_connection diff --git a/scripts/qc_on_rqtl2_bundle.py b/scripts/qc_on_rqtl2_bundle.py index 7784c06..fc95d13 100644 --- a/scripts/qc_on_rqtl2_bundle.py +++ b/scripts/qc_on_rqtl2_bundle.py @@ -20,9 +20,9 @@ from uploader import jobs from uploader.db_utils import database_connection from uploader.check_connections import check_db, check_redis -from r_qtl import errors as rqe from r_qtl import r_qtl2 as rqtl2 from r_qtl import r_qtl2_qc as rqc +from r_qtl import exceptions as rqe from r_qtl import fileerrors as rqfe from scripts.process_rqtl2_bundle import parse_job @@ -105,7 +105,7 @@ def retrieve_errors_with_progress(rconn: Redis,#pylint: disable=[too-many-locals __update_processed__(value) rconn.hset(fqjobid, f"{filetype}-linecount", count) - except rqe.MissingFileError: + except rqe.MissingFileException: fname = cdata.get(filetype) yield rqfe.MissingFile(filetype, fname, ( f"The file '{fname}' does not exist in the bundle despite it being " |