aboutsummaryrefslogtreecommitdiff
path: root/r_qtl/r_qtl2_qc.py
diff options
context:
space:
mode:
authorFrederick Muriuki Muriithi2024-08-09 14:20:17 -0500
committerFrederick Muriuki Muriithi2024-08-12 09:47:19 -0500
commit321cb85283dc0a182e86d0ee509cae9ced4e39cd (patch)
treea05a9cbd98f14d9a27139f99ea4b7f6b0daefcee /r_qtl/r_qtl2_qc.py
parentd29a205d83a3eeba49483cc2f3fd372e461b5a9c (diff)
downloadgn-uploader-321cb85283dc0a182e86d0ee509cae9ced4e39cd.tar.gz
Rename module: Module contains exceptions classes.
Diffstat (limited to 'r_qtl/r_qtl2_qc.py')
-rw-r--r--r_qtl/r_qtl2_qc.py6
1 files changed, 3 insertions, 3 deletions
diff --git a/r_qtl/r_qtl2_qc.py b/r_qtl/r_qtl2_qc.py
index be1eac4..7e93d23 100644
--- a/r_qtl/r_qtl2_qc.py
+++ b/r_qtl/r_qtl2_qc.py
@@ -3,8 +3,8 @@ from zipfile import ZipFile
from functools import reduce, partial
from typing import Union, Iterator, Optional, Callable
-from r_qtl import errors as rqe
from r_qtl import r_qtl2 as rqtl2
+from r_qtl import exceptions as rqe
from r_qtl.r_qtl2 import FILE_TYPES
from r_qtl.fileerrors import MissingFile
@@ -59,7 +59,7 @@ def validate_bundle(zfile: ZipFile):
"""Ensure the R/qtl2 bundle is valid."""
missing = missing_files(zfile)
if len(missing) > 0:
- raise rqe.MissingFileError(
+ raise rqe.MissingFileException(
"The following files do not exist in the bundle: " +
", ".join(mfile[1] for mfile in missing))
@@ -111,6 +111,6 @@ def retrieve_errors(zfile: ZipFile, filetype: str, checkers: tuple[Callable]) ->
if value is not None:
for checker in checkers:
yield checker(lineno=lineno, field=field, value=value)
- except rqe.MissingFileError:
+ except rqe.MissingFileException:
fname = cdata.get(filetype)
yield MissingFile(filetype, fname, f"Missing '{filetype}' file '{fname}'.")