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authorFrederick Muriuki Muriithi2024-07-01 12:38:01 -0500
committerFrederick Muriuki Muriithi2024-07-01 12:38:01 -0500
commit0e74a1589db9f367cdbc3dce232b1b6168e3aca1 (patch)
tree1988790891e8d6fe4630dd4d79a85a7e8917b1f9 /qc_app/upload
parenta4255e01599f7bb0dd4b5d5fb7361d8271d9d86d (diff)
downloadgn-uploader-0e74a1589db9f367cdbc3dce232b1b6168e3aca1.tar.gz
Check for genotype samples in the database
Check for genotype samples in both the R/qtl2 file and in the database.
Diffstat (limited to 'qc_app/upload')
-rw-r--r--qc_app/upload/rqtl2.py3
1 files changed, 2 insertions, 1 deletions
diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 4ff7ba3..31d5a9d 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -207,7 +207,8 @@ def trigger_rqtl2_bundle_qc(
str(jobid),
[sys.executable, "-m", "scripts.qc_on_rqtl2_bundle",
app.config["SQL_URI"], app.config["REDIS_URL"],
- jobs.jobsnamespace(), str(jobid), "--redisexpiry",
+ jobs.jobsnamespace(), str(jobid), str(species_id),
+ str(population_id), "--redisexpiry",
str(redis_ttl_seconds)],
"rqtl2-bundle-qc-job",
redis_ttl_seconds,