Initialise R/qtl2 bundle upload path

Initialise the upload path for R/qtl2 bundles. This commit adds UI
that allows the user to select from existing species, before
proceeding to the next stage.

2 files changed, 35 insertions, 1 deletions

diff --git a/qc_app/templates/base.html b/qc_app/templates/base.html
index 0cc970c..3b701bc 100644
--- a/qc_app/templates/base.html
+++ b/qc_app/templates/base.html
@@ -11,7 +11,7 @@
     <link rel="stylesheet" type="text/css" href="/static/css/styles.css" />
     {%block css%}{%endblock%}
 
-    <link rel="icon" type="image/png" sizes="64x64"
+    <link rel="shortcut icon" type="image/png" sizes="64x64"
 	  href="/static/images/CITGLogo.png" />
   </head>
 
diff --git a/qc_app/templates/rqtl2/index.html b/qc_app/templates/rqtl2/index.html
new file mode 100644
index 0000000..24f19fa
--- /dev/null
+++ b/qc_app/templates/rqtl2/index.html
@@ -0,0 +1,34 @@
+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Data Upload{%endblock%}
+
+{%block contents%}
+<h1 class="heading">R/qtl2 data upload</h1>
+
+<h2>R/qtl2 Upload</h2>
+
+<form method="POST" action="{{url_for('upload.rqtl2.select_species')}}"
+      id="frm-rqtl2-upload">
+  <legend class="heading">upload R/qtl2 bundle</legend>
+  {{flash_messages("error-rqtl2")}}
+  <fieldset>
+    <label for="select:species">Species</label>
+    <select id="select:species" name="species_id" required="required">
+      <option value="">Select species</option>
+      {%for spec in species%}
+      <option value="{{spec.SpeciesId}}">{{spec.MenuName}}</option>
+      {%endfor%}
+    </select>
+    <span class="form-input-help">
+      Data that you upload to the system should belong to a know species.
+      Here you can select the species that you wish to upload data for.
+    </span>
+  </fieldset>
+
+  <fieldset>
+    <input type="submit" value="submit" class="btn btn-main form-col-2" />
+  </fieldset>
+</form>
+
+{%endblock%}