Feature: Upload Samples/Cases

Implements the code enabling the upload of the samples/cases to the database.

1 files changed, 105 insertions, 0 deletions

diff --git a/qc_app/templates/samples/select-population.html b/qc_app/templates/samples/select-population.html
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+++ b/qc_app/templates/samples/select-population.html
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+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Select Grouping/Population{%endblock%}
+
+{%block contents%}
+<h1 class="heading">Select grouping/population</h1>
+
+<div>
+  <p>We organise the samples/cases/strains in a hierarchichal form, starting
+    with <strong>species</strong> at the very top. Under species, we have a
+    grouping in terms of the relevant population
+    (e.g. Inbred populations, cell tissue, etc.)</p>
+</div>
+
+<hr />
+
+<form method="POST" action="{{url_for('samples.select_population')}}">
+  <legend class="heading">select grouping/population</legend>
+  {{flash_messages("error-select-population")}}
+
+  <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+  <fieldset>
+    <label for="select:inbredset" class="form-col-1">grouping/population</label>
+    <select id="select:inbredset"
+	    name="inbredset_id"
+	    required="required"
+	    class="form-col-2">
+      <option value="">Select a grouping/population</option>
+      {%for pop in populations%}
+      <option value="{{pop.InbredSetId}}">
+	{{pop.InbredSetName}} ({{pop.FullName}})</option>
+      {%endfor%}
+    </select>
+  </fieldset>
+
+  <fieldset>
+    <input type="submit"
+	   value="select population"
+	   class="btn btn-main form-col-2" />
+  </fieldset>
+</form>
+
+<p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
+
+<form method="POST" action="{{url_for('samples.create_population')}}">
+  <legend class="heading">create new grouping/population</legend>
+  {{flash_messages("error-create-population")}}
+
+  <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+  <fieldset>
+    <legend>mandatory</legend>
+    <label for="txt:inbredset-name" class="form-col-1">name</label>
+    <input id="txt:inbredset-name"
+	   name="inbredset_name"
+	   type="text"
+	   required="required"
+	   placeholder="Enter grouping/population name"
+	   class="form-col-2" />
+
+    <label for="txt:" class="form-col-1">full name</label>
+    <input id="txt:inbredset-fullname"
+	   name="inbredset_fullname"
+	   type="text"
+	   required = "required"
+	   placeholder="Enter the grouping/population's full name"
+	   class="form-col-2" />
+  </fieldset>
+  <fieldset>
+    <legend>Optional</legend>
+
+    <label for="num:public" class="form-col-1">public?</label>
+    <input id="num:public"
+	   name="public"
+	   type="number"
+	   min="0" max="2" value="2"
+	   class="form-col-2" />
+
+    <label for="txt:inbredset-family" class="form-col-1">family</label>
+    <input id="txt:inbredset-family"
+	   name="inbredset_family"
+	   type="text"
+	   placeholder="I am not sure what this is about."
+	   class="form-col-2" />
+
+    <label for="txtarea:" class="form-col-1">Description</label>
+    <textarea id="txtarea:description"
+	      name="description"
+	      rows="5"
+	      placeholder="Enter a description of this grouping/population"
+	      class="form-col-2"></textarea>
+  </fieldset>
+
+  <fieldset>
+    <input type="submit"
+	   value="create grouping/population"
+	   class="btn btn-main form-col-2" />
+  </fieldset>
+</form>
+
+{%endblock%}
+
+
+{%block javascript%}
+{%endblock%}