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authorFrederick Muriuki Muriithi2022-08-05 10:10:56 +0300
committerFrederick Muriuki Muriithi2022-08-05 10:10:56 +0300
commit19c376c4b60592f4bba0e26952faa3a71b6f5641 (patch)
tree0916ef296a57bb450102093429422953d92c009e
parent3da6848381b6103fbb58eeab8d7051cba0bded58 (diff)
downloadgn-uploader-19c376c4b60592f4bba0e26952faa3a71b6f5641.tar.gz
Update job status. Display stdout and stderr outputs
* Display the status of the job, as it is running * Display STDERR output if an error occurs * Display STDOUT output as job is running and on successful completion of the job
-rw-r--r--qc_app/dbinsert.py5
-rw-r--r--qc_app/static/css/styles.css13
-rw-r--r--qc_app/templates/insert_progress.html9
-rw-r--r--scripts/insert_data.py5
-rw-r--r--scripts/worker.py15
5 files changed, 36 insertions, 11 deletions
diff --git a/qc_app/dbinsert.py b/qc_app/dbinsert.py
index 70aeb6d..589ac75 100644
--- a/qc_app/dbinsert.py
+++ b/qc_app/dbinsert.py
@@ -396,7 +396,10 @@ def insert_status(job_id: str):
job = jobs.job(rconn, job_id)
if job:
- if job["status"] == "success":
+ job_status = job["status"]
+ if job_status == "success":
return render_template("insert_success.html", job=job)
+ if job["status"] == "error":
+ return render_template("insert_error.html", job=job)
return render_template("insert_progress.html", job=job)
return render_template("no_such_job.html", job_id=job_id), 400
diff --git a/qc_app/static/css/styles.css b/qc_app/static/css/styles.css
index 5340701..d20c1fb 100644
--- a/qc_app/static/css/styles.css
+++ b/qc_app/static/css/styles.css
@@ -2,6 +2,10 @@
box-sizing: border-box;
}
+body {
+ padding: 0 1em 0 1em;
+}
+
label, legend {
text-transform: capitalize;
}
@@ -130,3 +134,12 @@ form legend {
font-weight: bolder;
line-height: 2em;
}
+
+.cli-output {
+ background: black;
+ color: #00DD00;
+ padding: 1em;
+ font-weight: bold;
+ border-radius: 0.8em;
+ width: 55em;
+}
diff --git a/qc_app/templates/insert_progress.html b/qc_app/templates/insert_progress.html
index 1ac6212..52beaa4 100644
--- a/qc_app/templates/insert_progress.html
+++ b/qc_app/templates/insert_progress.html
@@ -1,4 +1,5 @@
{%extends "base.html"%}
+{%from "stdout_output.html" import stdout_output%}
{%block extrameta%}
<meta http-equiv="refresh" content="5">
@@ -7,18 +8,16 @@
{%block title%}Job Status{%endblock%}
{%block contents%}
-<h1 class="heading">{{job_name}}</h2>
+<h1 class="heading">{{job_name}}</h1>
<label for="job_status">status:</label>
<span>{{job_status}}: {{message}}</span><br />
-{{job}}
<label for="job_{{job_id}}">inserting: </label>
<progress id="job_{{job_id}}" value="{{(job['percent'] | float) / 100}}">{{job["percent"]}}</progress>
<span>{{"%.2f" | format(job['percent'] | float)}}%</span>
-<div>
- {{job.stderr}}
-</div>
+
+{{stdout_output(job)}}
{%endblock%}
diff --git a/scripts/insert_data.py b/scripts/insert_data.py
index 6491b06..7bf20f1 100644
--- a/scripts/insert_data.py
+++ b/scripts/insert_data.py
@@ -122,7 +122,9 @@ def __format_query__(query, params):
for param in params)
values_str = ", ".join(
f"('{__param_str__(value_tup)}')" for value_tup in values)
- return f"{query[:idx]} VALUES{values_str};"
+ insert_str = query[:idx].replace(
+ "INSERT INTO ", "INSERT INTO\n\t")
+ return f"{insert_str}\nVALUES\n\t{values_str};"
def insert_means(
filepath: str, speciesid: int, datasetid: int, dbconn: mdb.Connection,
@@ -149,6 +151,7 @@ def insert_means(
if not bool(means):
break
print(__format_query__(means_query, means))
+ print()
print(__format_query__(xref_query, means))
cursor.executemany(means_query, means)
cursor.executemany(xref_query, means)
diff --git a/scripts/worker.py b/scripts/worker.py
index 03751d2..391f522 100644
--- a/scripts/worker.py
+++ b/scripts/worker.py
@@ -27,13 +27,16 @@ def parse_args():
return args
-def update_stdout_stderr(bytes_read, stream: str, rconn, job_id):
+def update_stdout_stderr(rconn, job_id, bytes_read, stream: str):
"Update the stdout/stderr keys according to the value of `stream`."
job = jobs.job(rconn, job_id)
contents = job.get(stream, '')
new_contents = contents + bytes_read.decode("utf-8")
rconn.hset(name=job_id, key=stream, value=new_contents)
+def update_status(rconn, job_id, status):
+ rconn.hset(name=job_id, key="status", value=status)
+
def run_job(job, rconn):
"Run the actual job."
job_id = job["job_id"]
@@ -45,18 +48,22 @@ def run_job(job, rconn):
shlex.split(job["command"]), stdout=subprocess.PIPE,
stderr=tmpfl) as process:
while process.poll() is None:
+ update_status(rconn, job_id, "running")
update_stdout_stderr(
- process.stdout.read1(), "stdout", rconn, job_id)
+ rconn, job_id, process.stdout.read1(), "stdout")
sleep(1)
with open(stderrpath, "rb") as stderr:
- update_stdout_stderr(stderr.read(), "stderr", rconn, job_id)
+ stderr_content = stderr.read()
+ update_stdout_stderr(rconn, job_id, stderr_content, "stderr")
+ update_status(rconn, job_id, ("error" if bool(stderr_content) else "success"))
os.remove(stderrpath)
return process.poll()
except Exception as exc:# pylint: disable=[broad-except,unused-variable]
+ update_status(rconn, job_id, "error")
update_stdout_stderr(
- traceback.format_exc().encode("utf-8"), "stderr", rconn, job_id)
+ rconn, job_id, traceback.format_exc().encode("utf-8"), "stderr")
print(traceback.format_exc(), file=sys.stderr)
sys.exit(4)