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Data transformers for GeneNetwork (particularly to RDF)
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2023-12-22
Replace gnt:symbol with gnt:geneSymbol.
Munyoki Kilyungi
2023-12-22
Refactor gene metadata RDF transform.
Munyoki Kilyungi
2023-12-22
Replace gnc:GeneSymbol with gnc:Gene.
Munyoki Kilyungi
2023-12-22
Delete "GROUP BY" when transforming genelist/genelist_rn33 metadata.
Munyoki Kilyungi
2023-12-22
Use gnt:geneSymbol instead of rdfs:label/gnt:symbol.
Munyoki Kilyungi
2023-12-22
Use gnt:hasGeneId instead of gnt:gene/dct:references.
Munyoki Kilyungi
2023-12-22
Move gnt:hasGeneId definitions to genelist.scm
Munyoki Kilyungi
2023-12-15
Preserve gene symbol case when used as an identifer.
Munyoki Kilyungi
2023-12-15
Use URI encoding for OMIM and homologene resource link handling.
Munyoki Kilyungi
2023-12-15
Refactor Uniprot and GeneId handling in ProbeSet RDF transform.
Munyoki Kilyungi
2023-12-15
Add missing "gene:" prefix in ProbeSet RDF transform.
Munyoki Kilyungi
2023-12-15
Trim gene symbol rdfs:label for the GeneList_rn33 table.
Munyoki Kilyungi
2023-12-15
Use URI encoding for symbol-based resource link URLs.
Munyoki Kilyungi
2023-12-14
Remove "remap-species-identifiers" from generif transform.
Munyoki Kilyungi
2023-12-14
Link extra resources to genes and trim gene symbols.
Munyoki Kilyungi
2023-12-14
Refactor symbol identifier in strains.scm.
Munyoki Kilyungi
2023-12-14
Add GeneList metadata RDF transform.
Munyoki Kilyungi
2023-12-14
Remove some resource links from ProbeSet RDF transform.
Munyoki Kilyungi
2023-12-14
Use correct identifier for the AvgMethod table.
Munyoki Kilyungi
2023-12-04
Replace xkos:classifiedUnder -> gnt:belongsToGroup.
Munyoki Kilyungi
2023-12-04
Replace xkos:classifiedUnder -> gnt:belongsToSpecies for species.
Munyoki Kilyungi
2023-12-04
Replace xkos:classifiendUnder with gnt:belongsToGroup for groups.
Munyoki Kilyungi
2023-12-04
Fix typo in publishfreeze transform.
Munyoki Kilyungi
2023-11-30
Trim the contributor's name when transforming phenotype metadata.
Munyoki Kilyungi
2023-11-30
Add a label to the "gnt:lodScore" term.
Munyoki Kilyungi
2023-11-30
Set a phenotype's gnt:locus to a genotype.
Munyoki Kilyungi
2023-11-30
Replace LRS with LOD Score.
Munyoki Kilyungi
2023-11-24
Move remap-species-identifier to strings.scm.
Munyoki Kilyungi
2023-11-22
"Add special-case for blank Chr field".
Munyoki Kilyungi
2023-11-22
Construct URIs for external data in RDF ProbeSet transform.
Munyoki Kilyungi
2023-11-22
Add extra joins for GeneList and GeneList_rn33.
Munyoki Kilyungi
2023-11-22
Delete some RDF prefixes when transforming ProbeSet metadata.
Munyoki Kilyungi
2023-11-22
Remove unused properties during ProbeSet RDF transform.
Munyoki Kilyungi
2023-11-22
Add Species join when during RDF ProbeSet transform.
Munyoki Kilyungi
2023-11-21
Add extra gnt:location term when transforming ProbeSet metadata.
Munyoki Kilyungi
2023-11-21
Add strand position when transforming ProbeSet metadata.
Munyoki Kilyungi
2023-11-21
Delete un-necessary predicates from ProbeSet transform.
Munyoki Kilyungi
2023-11-20
Add "gnt:belongsToSpecies" and "gnt:belongsToGroup" gn terms.
Munyoki Kilyungi
2023-11-17
Remove "FamilyOrder" join when transforming Species table.
Munyoki Kilyungi
2023-11-17
Capitalize InbredSetName id's consistently.
Munyoki Kilyungi
2023-11-17
Make species identifiers consistent.
Munyoki Kilyungi
2023-11-17
Revert "Make Phenotypy InbredSet classification consistent."
Munyoki Kilyungi
2023-11-17
Make Phenotypy InbredSet classification consistent.
Munyoki Kilyungi
2023-10-20
Use the correct URL for "gnt:" prefix.
Munyoki Kilyungi
2023-10-20
Alias Publication.Id to PublicationId
Munyoki Kilyungi
2023-10-19
Use InbredSetCode instead of Name when creating a trait name.
Munyoki Kilyungi
2023-10-19
Check (Publish/Geno)Freeze for InbredSet if NULL in InfoFiles.
Munyoki Kilyungi
2023-10-19
Remove un-necessary WHERE clause when dumping phenotypes.
Munyoki Kilyungi
2023-10-19
Add missing xkos prefix in phenotype dump.
Munyoki Kilyungi
2023-10-17
Replace skos:prefLabel with rdfs:label for genotypes.
Munyoki Kilyungi
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