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path: root/examples/dump-species-metadata.scm
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2023-07-30Replace "gn-term" with "gnt" prefixMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-30Use "string->binomial-name" to id speciesMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-30Use correct URL for rdf prefixMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-30Rename 'gn-id' prefix to 'gn'Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-30Replace gn with gn-term and gn-id where suitableMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-30Replace gn:species with gn-speciesMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-30Update dump-species to have lists for inputs and outputMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-30Add "gn:species:" prefixMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-30Capitalize species identifierMunyoki Kilyungi
Replace gn:species_mus_musculus with gn:species:Mus_musculus.
2023-07-30Dump species metadata with documentationMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-06-12Use NCBI taxonomy browser instead of uniprotMunyoki Kilyungi
NCBI presents data in a user friendly way from the taxid. To get the same data from uniprot, you need a unique identify which requires an extra query to retrieve. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-26Replace dump.scm with separete dumps for several tablesMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>