Age | Commit message (Collapse) | Author | |
---|---|---|---|
2023-08-09 | Update how phenotypes are dumped | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-08-07 | Update phenotype and publishfreeze dump | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-08-07 | Update publish-freeze dump | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-08-07 | Update how published datasets are dumped | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-07-31 | Add gnc: prefix | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-07-31 | Replace "gn-term" with "gnt" prefix | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-07-21 | Update phenotype dump | Munyoki Kilyungi | |
2023-07-21 | Use "gn:" and "gn-term:" when dumping phenotypes | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-07-21 | Dump phenotypes with documentation. | Munyoki Kilyungi | |
2023-06-12 | Use PublishFreeze Name as a fallback for InfoPageName | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-06-12 | Annotate a phenotype dataset with 'dataset: | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-06-12 | Annotate publications without a pmid with "unpublished" | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-06-12 | Use "publication:" as an identifier for publications | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-06-12 | Use NCBI taxonomy browser instead of uniprot | Munyoki Kilyungi | |
NCBI presents data in a user friendly way from the taxid. To get the same data from uniprot, you need a unique identify which requires an extra query to retrieve. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-06-12 | Make ((g/ph)enotype/probeset)Dataset subset of Dataset | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-05-30 | Only dump public data | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-05-26 | Use a phenotype's abbreviation as it's name | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-05-26 | Return an empty string if a dataset doesn't have a name | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-05-26 | Update a dataset's subject identifier to be a gn url | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-05-26 | Annotate createtime field correctly with xsd:date | Munyoki Kilyungi | |
* examples/dump-phenotype.scm (dump-publishfreeze): Use xsd:date to annotate PublishFreeze's CreateTime field. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-05-26 | Replace dump.scm with separete dumps for several tables | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> |