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path: root/examples/dataset-metadata.scm
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2024-05-20Add pointers to git metadata in RDF for the dataset metadata.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-02-13Remove more fields from dataset's RDF output.Munyoki Kilyungi
These are: "Experiment_Type", "Contributors" & "Citation" which are already in RTF form. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-02-13Fix missplaced parens.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-02-09Re-add triplets that describe dataset terms.Munyoki Kilyungi
These triplets will be re-used when constructing the json-ld endpoints for GN3. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-02-08Delete rdf triplets from dataset transform.Munyoki Kilyungi
These triplets are now stored as text files and versioned in git. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-08Add InfoFiles.Experiment_Type metadata.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-12-04Replace xkos:classifiendUnder with gnt:belongsToGroup for groups.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-12-04Fix typo in publishfreeze transform.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-11-20Add "gnt:belongsToSpecies" and "gnt:belongsToGroup" gn terms.Munyoki Kilyungi
These terms are useful when constructing a graph for framing purposes in json-ld. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-11-17Capitalize InbredSetName id's consistently.Munyoki Kilyungi
2023-11-17Make species identifiers consistent.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-10-19Check (Publish/Geno)Freeze for InbredSet if NULL in InfoFiles.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-10-16Fix typo.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-10-03Classify pheno/genotype and probeset datasets using dcat:Dataset.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-30Add an extra alias to InbredSet.InbredSetNameMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-28Set string->identifier to defaut to "" sep and string-capitalizeMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-28Update how datasets are dumpedMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-28Replace gnt:belongsToSpecies/Set with xkos:classifiedUnderMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-25Replace gdmt: with dcat:Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-21Delete gnt:hasAcknowledgement from InfoFilesMunyoki Kilyungi
We fetch all our metadata from the Datasets table. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-21Add missing functionMunyoki Kilyungi
* examples/dataset-metadata.scm (remap-species-identifiers): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-21Remove hard-coded pathsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-21Rename dump -> transformMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-21Remove "dump-" prefixMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>