gn-transform-databases - Data transformers for GeneNetwork (particularly to RDF)

Age	Commit message (Collapse)	Author
2023-04-05	Add ability to have operations such as GROUP_CONCAT in SELECT clause	Munyoki Kilyungi
	This change enables having: "... GROUP_CONCAT(GeneRIF_BASIC.PubMedId) AS alias ..." as part of the query. * dump.scm (field->key, field->assoc-ref): Add new syntax-rule. * dump/sql.scm (select-query): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-10-30	Move triple utilities to new module.	Arun Isaac
	* dump.scm (string->identifier, string-blank?, triple, prefix): Move to ... * dump/triples.scm: ... new file. * dump.scm: Import (dump triples).
2022-10-30	Move string-blank? to (dump utils).	Arun Isaac
	* dump.scm (string-blank?): Move to ... * dump/utils.scm (string-blank?): ... here.
2022-03-10	Rename the delete verb of map-alist to remove.	Arun Isaac
	The delete verb of map-alist somehow interacts with the delete function from (srfi srfi-1), and I'm not able to figure out how. It is simpler to just rename the delete verb to remove. * dump/utils.scm: Do not rename the delete function from (srfi srfi-1). (map-alist): Rename the delete verb to remove. * tests.scm ("map-alist docstring example"): Update test.
2021-12-23	Add dumped? field to <column> type.	Arun Isaac
	* dump/table.scm (<column>): Add dumped? field. Rename constructor to column-constructor. (make-column): Implement as wrapper around column-constructor.
2021-12-20	Capture full column type.	Arun Isaac
	Capture full column type instead of just whether it is an integer. * dump.scm (dump-data-table): Capture full column type in <column> object. * dump/table.scm (<column>)[int?]: Delete member. [type]: New member. Export column-type instead of column-int?.
2021-12-20	Move <table> and <column> types to separate module.	Arun Isaac
	* dump.scm (<table>, <column>): Move to ... * dump/table.scm: ... here.
2021-12-16	Specify map-alist behaviour for multiple set verbs.	Arun Isaac
	* dump/utils.scm (map-alist): Specify behaviour for multiple set verbs.
2021-12-16	Generalize collect-keys and key->assoc-ref.	Arun Isaac
	The generalized versions---collect forms and translate-forms---will be required by other macros. * dump/utils.scm (collect-forms, translate forms): New public functions. (collect-keys): Rewrite in terms of collect-forms. (key->assoc-ref): Rewrite in terms of translate-forms.
2021-12-16	Rename away delete from (srfi srfi-1).	Arun Isaac
	delete from (srfi srfi-1) somehow interferes with the delete verb of map-alist. It is not clear why. * dump/utils.scm (dump): Rename delete to srfi:delete while importing.
2021-12-15	Move string similarity functions to separate module.	Arun Isaac
	* dump.scm: Use (dump string-similarity). (trigrams, jaccard-index, jaccard-string-similarity, jaccard-string-similar?): Move to ... * dump/string-similarity.scm: ... here.
2021-12-11	Implement S-expression like SQL select query.	Arun Isaac
	* dump/sql.scm: Import (srfi srfi-1). Export select-query. (select-query): New macro.
2021-12-04	Implement the map-alist DSL.	Arun Isaac
	map-alist is a DSL to transform one association list into another. These transformations are frequently required when dumping tables, especially metadata tables. * dump/utils.scm: New file.
2021-08-27	Initial commit	Arun Isaac