| Age | Commit message (Collapse) | Author |
|---|
|
* dump.scm: Import (dump utils).
(string-blank?): New function.
(scm->triples): Filter out triples with #f or blank string objects.
(process-metadata-alist): Delete function.
(default-metadata-proc): New function.
(dump-species, dump-strain, mapping-method-name->id, dump-inbred-set,
dump-phenotype, dump-publication, dump-publish-xref, dump-tissue,
dump-investigators, dump-avg-method, dump-gene-chip, dump-info-files):
Use map-alist.
|
|
* dump.scm (investigator-email->id): Rename to
investigator-attributes->id. Use first and last names in addition to
the email ID.
(dump-investigators): Use investigator-attributes->id. Include records
that have no email ID.
(dump-info-files): Use investigator-attributes->id. Include records
that have no email ID.
|
|
For the simple task of removing spaces, string-delete is
sufficient. string-replace-substring is overkill.
* dump.scm (fix-email-id): Use string-delete instead of
string-replace-substring.
|
|
Building a turtle identifier from a string after removing illegal
characters and prefixing is an extremely common operation. Abstract
it. Also, mandate identifier prefixes. It is better to play it safe.
* dump.scm (string->identifier): New function.
(binomial-name->species-id, dump-strain, mapping-method-name->id,
inbred-set-name->id, aphenotype-id->id, tissue-short-name->id,
investigator-email->id, avg-method-name->id, gene-chip-name->id): Use
string->identifier.
|
|
* dump.scm (delete-substring): Add docstring.
|
|
* dump.scm (dump-info-files): Deal with AvgMethodId.
|
|
Not all datasets have a non-NULL InfoPageTitle field.
* dump.scm (dump-info-files): Use InfoFileTitle instead of
InfoPageTitle for dataset name.
|
|
* dump.scm (dump-info-files): Extract name of dataset group.
|
|
Not all inbred sets have a mapping method, and the mapping method of
the inbred set has, so far, not been used anywhere.
* dump.scm (mapping-method-name->id, dump-mapping-method): Mark as
unused.
(dump-inbred-set): Do not link inbred-set to mapping-method.
|
|
* dump.scm (dump-avg-method): Allow N/A in name.
(dump-info-files): Allow N/A in avg-method-name.
(avg-method-name->id): Replace / with _.
|
|
* dump.scm (dump-info-files): Remove gn:geoSeries when value starts
with "No Geo Series...".
|
|
* dump.scm: In the gn:prefix, use http instead of https.
|
|
* dump.scm: Remove rdfs: prefix.
|
|
Parentheses became unbalanced due to my careless git use.
* dump.scm: Fix unbalanced parentheses.
|
|
* dump.scm (dump-info-files): New function.
[main]: Call dump-info-files.
|
|
* dump.scm (delete-substrings): New function.
(dump-publication): Replace string-replace-substring with
delete-substrings.
|
|
* dump.scm (dump-publication, dump-tissue): Do not define any property
to be a sub-property of rdfs:label.
|
|
* dump.scm (gene-chip-name->id, dump-gene-chip): New functions.
[main]: Call dump-gene-chip.
|
|
* dump.scm (avg-method-name->id, dump-avg-method): New functions.
[main]: Call dump-avg-method.
|
|
* dump.scm (camel->kebab): Delete function.
|
|
* dump.scm (fix-email-id, investigator-email->id, dump-investigators):
New functions.
Invoke dump-investigators.
|
|
* dump.scm (tissue-short-name->id, dump-tissue): New functions.
Invoke dump-tissue.
|
|
* dump.scm: Add foaf prefix.
|
|
* dump.scm (prefix): New function.
Use prefix.
|
|
|
