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Data transformers for GeneNetwork (particularly to RDF)
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2023-08-28
Treat strings wrapped in "()" as symbols
Munyoki Kilyungi
2023-08-28
Rename file
Munyoki Kilyungi
2023-08-28
Add new file with classification hierarchy ontology
Munyoki Kilyungi
2023-08-25
Replace gdmt: with dcat:
Munyoki Kilyungi
2023-08-24
Remove match-case for RDF-FILE
Munyoki Kilyungi
2023-08-24
Add new methods for bulk-loading data
Munyoki Kilyungi
2023-08-24
Delete http methods for adding data
Munyoki Kilyungi
2023-08-23
Add all transformers as inputs to transform-with-documentation
Munyoki Kilyungi
2023-08-23
Update how NCBI genewiki entries are transformed
Munyoki Kilyungi
2023-08-23
Update how symbols from GeneRIF_BASIC are transformed
Munyoki Kilyungi
2023-08-23
Delete blank-node construct
Munyoki Kilyungi
2023-08-23
Add foaf prefix when transforming generif data
Munyoki Kilyungi
2023-08-23
Update how gn-specific genewiki entries are transformed
Munyoki Kilyungi
2023-08-23
Add extra utility fn for removing duplicates
Munyoki Kilyungi
2023-08-23
Add an extra module for generating unique ids
Munyoki Kilyungi
2023-08-21
Replace gnt:traitName with rdfs:label
Munyoki Kilyungi
2023-08-21
Delete gnt:hasAcknowledgement from InfoFiles
Munyoki Kilyungi
2023-08-21
Add missing function
Munyoki Kilyungi
2023-08-21
Remove hard-coded paths
Munyoki Kilyungi
2023-08-21
Rename dump -> transform
Munyoki Kilyungi
2023-08-21
Remove "dump-" prefix
Munyoki Kilyungi
2023-08-21
Rename define-dump -> define-transformer
Munyoki Kilyungi
2023-08-21
Replace inbredSet with set as the string-identifier
Munyoki Kilyungi
2023-08-21
Move dumps related to datasets to one place
Munyoki Kilyungi
2023-08-21
Rename inbredSet -> set
Munyoki Kilyungi
2023-08-19
Add traitName
Munyoki Kilyungi
2023-08-19
Point ttl path to /export/data/genenetwork-virtuoso/
Munyoki Kilyungi
2023-08-19
Rename inbredSet identifier
Munyoki Kilyungi
2023-08-19
Add short name of an inbredSet as an altName
Munyoki Kilyungi
2023-08-17
Rename gnt:species -> gnt:belongsToSpecies
Munyoki Kilyungi
2023-08-17
Update genotype rdf transformation
Munyoki Kilyungi
2023-08-17
Update how phenotypes are transformed
Munyoki Kilyungi
2023-08-15
Rename gnt:molecularTrait -> gnt:hasTissue
Munyoki Kilyungi
2023-08-15
Add missing skos prefix
Munyoki Kilyungi
2023-08-15
Add "probeset_" prefix to probesets
Munyoki Kilyungi
2023-08-15
Rename dump-probeset-metadata -> dump-probeset-data
Munyoki Kilyungi
2023-08-15
Remove "xsd:double" annotation
Munyoki Kilyungi
2023-08-15
Dump probeset summary stats
Munyoki Kilyungi
2023-08-15
Rename probeset dataset name
Munyoki Kilyungi
2023-08-15
Introduce phenotype/genotype/probeset Dataset as a category
Munyoki Kilyungi
2023-08-15
Return "" for non-empty strings in string->identifier/annotate-field
Munyoki Kilyungi
2023-08-15
Update probeset dump
Munyoki Kilyungi
2023-08-15
Update how probesetfreeze metadata is dumped
Munyoki Kilyungi
2023-08-15
Replace "used" with "uses" in ontology
Munyoki Kilyungi
2023-08-15
Update how genotypes are dumped
Munyoki Kilyungi
2023-08-15
Use prism, fabio and dct ontologies to represent a publication
Munyoki Kilyungi
2023-08-15
Dump publishfreeze data
Munyoki Kilyungi
2023-08-15
Remove explicity cast when dumping strains
Munyoki Kilyungi
2023-08-15
Delete explicit sql-level utf-8 conversions
Munyoki Kilyungi
2023-08-12
Add comment on Strain table
Pjotr Prins
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