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2021-12-01Replace guix environment with guix shell.Arun Isaac
guix environment is deprecated. * guix.scm: Replace guix environment with guix shell.
2021-12-01Remove unrequired rdfs: prefix.Arun Isaac
* dump.scm: Remove rdfs: prefix.
2021-11-11Fix unbalanced parentheses.Arun Isaac
Parentheses became unbalanced due to my careless git use. * dump.scm: Fix unbalanced parentheses.
2021-11-09Use upstream guile-dbi and guile-dbd-mysql.Arun Isaac
* guix.scm: Do not prefix guix: in importing (gnu packages guile-xyz). (guile-dbi, guile-dbi-bootstrap, guile-dbd-mysql): Delete variables.
2021-09-14Dump InfoFiles.Arun Isaac
* dump.scm (dump-info-files): New function. [main]: Call dump-info-files.
2021-09-14Abstract out deleting substrings.Arun Isaac
* dump.scm (delete-substrings): New function. (dump-publication): Replace string-replace-substring with delete-substrings.
2021-09-14Update python-rdflib package.Arun Isaac
* guix.scm: Import (gnu packages dbm), (guix build-system python) and (guix download). (python-berkeleydb, python-rdflib-6): New variables. [mainfest]: Replace python-rdflib with python-rdflib-6. Remove python-urrlib3.
2021-09-14Update guile-dbi package.Arun Isaac
* guix.scm (guile-dbi): Update to 2.1.8. (guile-dbi-bootstrap): Inherit from guile-dbi instead of guix:guile-dbi. Update comments about contributing upstream.
2021-09-14Do not define sub-properties of rdfs:label.Arun Isaac
* dump.scm (dump-publication, dump-tissue): Do not define any property to be a sub-property of rdfs:label.
2021-09-14Dump GeneChip.Arun Isaac
* dump.scm (gene-chip-name->id, dump-gene-chip): New functions. [main]: Call dump-gene-chip.
2021-09-14Dump AvgMethod.Arun Isaac
* dump.scm (avg-method-name->id, dump-avg-method): New functions. [main]: Call dump-avg-method.
2021-09-14Delete unused camel->kebab function.Arun Isaac
* dump.scm (camel->kebab): Delete function.
2021-09-09Dump Investigators.Arun Isaac
* dump.scm (fix-email-id, investigator-email->id, dump-investigators): New functions. Invoke dump-investigators.
2021-09-09Dump Tissue.Arun Isaac
* dump.scm (tissue-short-name->id, dump-tissue): New functions. Invoke dump-tissue.
2021-09-09Add foaf prefix.Arun Isaac
* dump.scm: Add foaf prefix.
2021-09-09Abstract out prefix entries.Arun Isaac
* dump.scm (prefix): New function. Use prefix.
2021-08-27Initial commitArun Isaac